Browse Element(s) Details


Os.57276.1.S1_at

Description gb:AK111226.1
DB_XREF= gi:32996435
TID=Os.57276.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57276 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-179-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-179-D09, full insert sequence.
FL= gb:AK111226.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5583011/11transposon protein, putative, Mutator sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55784Os.4995.1.S1_at7/113+31697109..31700416expressed protein
LOC_Os03g55784Os.8266.2.S1_at7/113+31697109..31700416expressed protein
LOC_Os03g55800Os.8266.1.A1_at11/113+31703932..31705926Cytochrome P450 74A1, chloroplast precursor, putative, expressed
LOC_Os03g55810NANA3+31714944..31715444hypothetical protein
LOC_Os03g55820Os.7451.1.S1_at11/113+31717263..31720334Thioredoxin family protein, expressed
LOC_Os03g55830Os.57276.1.S1_at11/113+31724092..31727019transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g55840Os.53613.1.S1_at10/113+31727027..31728145expressed protein
LOC_Os03g55850Os.8017.1.S1_at11/113+31729548..31732200cold acclimation protein COR413-PM1, putative, expressed
LOC_Os03g55860Os.46012.2.S1_x_at8/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55860Os.27088.1.A1_x_at6/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55860Os.46012.3.S1_x_at4/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55860Os.10263.1.S1_at2/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55860Os.54691.1.S1_x_at1/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55860Os.45902.1.A1_x_at1/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55860OsAffx.22442.1.S1_x_at1/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55860OsAffx.9929.1.S1_at1/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55870Os.17653.1.S1_at11/113+31741251..31743092integral membrane protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57276.1.S1_at--1077--9131Chr03:31726453..31726477 (25 bp)
TGCGTCGCGCCATTGCAAGGACAAT
LOC_Os03g55830
Os.57276.1.S1_at--283--5151Chr03:31726467..31726491 (25 bp)
GCAAGGACAATCATGGCGAACGAAG
LOC_Os03g55830
Os.57276.1.S1_at--530--1051Chr03:31726771..31726795 (25 bp)
AGGTGTGCCAGTCACAGCAGCGCAC
LOC_Os03g55830
Os.57276.1.S1_at--728--1831Chr03:31726820..31726844 (25 bp)
ACGAATCGAGCAGAGCCCCTGAAAT
LOC_Os03g55830
Os.57276.1.S1_at--219--8971Chr03:31726839..31726863 (25 bp)
TGAAATTCTTCTCCCTTGCACATCA
LOC_Os03g55830
Os.57276.1.S1_at--1057--10731Chr03:31726854..31726878 (25 bp)
TTGCACATCATAGCTTCCACTTGTT
LOC_Os03g55830
Os.57276.1.S1_at--1027--291Chr03:31726863..31726887 (25 bp)
ATAGCTTCCACTTGTTTTCTCGTGT
LOC_Os03g55830
Os.57276.1.S1_at--127--10311Chr03:31726878..31726902 (25 bp)
TTTCTCGTGTTGATTCTTTACTTAG
LOC_Os03g55830
Os.57276.1.S1_at--787--10791Chr03:31726967..31726991 (25 bp)
TTGTAGCGGTGCACAATTGCTCAGT
LOC_Os03g55830
Os.57276.1.S1_at--1100--3171Chr03:31726980..31727004 (25 bp)
CAATTGCTCAGTGCCATCTGGATGG
LOC_Os03g55830
Os.57276.1.S1_at--456--491Chr03:31726995..31727019 (25 bp)
ATCTGGATGGCCAATGCATCAAGTC
LOC_Os03g55830
Target Sequence 
TGCGTCGCGCCATTGCAAGGACAATCATGGCGAACGAAGGTGGAGCAGCTGGTCAAGGGGAGGAAGAAGGCGACAGCGAT
GCCGGTGGAACATGGCGGGTGGCGACAAGGGGGAACCAAATGCTGAGGCTGGACATGGACAGCATGCGAAACCGGGTGCA
GGAGCTGGAGCGTGAGTGCACAAGCATGAGGAAAGCCATTGAGAAGATGGACCGGCGTGGCGGCGGCAGCACGCCAGGGG
AGAGAGGAGCAACGCCGGCGATGGAAGGACGGTGGGGATCAATGGTGACGAAGCGGTTCGGGTGCAAGTTCCCGGCGCAG
GTGTGCCAGTCACAGCAGCGCACGGTGGTGGCGCGGCCTCGCCGGCCACGAATCGAGCAGAGCCCCTGAAATTCTTCTCC
CTTGCACATCATAGCTTCCACTTGTTTTCTCGTGTTGATTCTTTACTTAGATTTGTGGAAAATGGAGGGGTTTTCCTTGG
GAGATATTGAGTTTTACCATGTTTGATCATTGAATTGTAGCGGTGCACAATTGCTCAGTGCCATCTGGATGGCCAATGCA
TCAAGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57276.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis