Browse Element(s) Details


Os.17653.1.S1_at

Description gb:AK106933.1
DB_XREF= gi:32992142
TID=Os.17653.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17653 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-119-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-C05, full insert sequence.
FL= gb:AK106933.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5587011/11integral membrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55820Os.7451.1.S1_at11/113+31717263..31720334Thioredoxin family protein, expressed
LOC_Os03g55830Os.57276.1.S1_at11/113+31724092..31727019transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g55840Os.53613.1.S1_at10/113+31727027..31728145expressed protein
LOC_Os03g55850Os.8017.1.S1_at11/113+31729548..31732200cold acclimation protein COR413-PM1, putative, expressed
LOC_Os03g55860Os.46012.2.S1_x_at8/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55860Os.27088.1.A1_x_at6/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55860Os.46012.3.S1_x_at4/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55860Os.10263.1.S1_at2/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55860Os.54691.1.S1_x_at1/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55860Os.45902.1.A1_x_at1/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55860OsAffx.22442.1.S1_x_at1/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55860OsAffx.9929.1.S1_at1/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55870Os.17653.1.S1_at11/113+31741251..31743092integral membrane protein, putative, expressed
LOC_Os03g55874OsAffx.30475.9.S1_s_at11/113+31758639..31759900ATP synthase beta chain, putative
LOC_Os03g55874OsAffx.30475.1.S1_s_at11/113+31758639..31759900ATP synthase beta chain, putative
LOC_Os03g55874OsAffx.30475.5.S1_x_at10/113+31758639..31759900ATP synthase beta chain, putative
LOC_Os03g55880NANA3+31763214..31763636hypothetical protein
LOC_Os03g55890OsAffx.3617.1.S1_at11/113+31764449..31768626ternary complex factor MIP1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17653.1.S1_at--1070--8351Chr03:31742124..31742148 (25 bp)
GGCGTCGAGTTCTTCAGCTATACTG
LOC_Os03g55870
Os.17653.1.S1_at--455--4451Chr03:31742148..31742475 (25 bp)
GCCTTCTGCTTCCTAGTTACAATAA
LOC_Os03g55870
Os.17653.1.S1_at--830--8071Chr03:31742494..31742518 (25 bp)
GGAGCTGTACACTCGCCATGATCGA
LOC_Os03g55870
Os.17653.1.S1_at--782--6991Chr03:31742522..31742546 (25 bp)
GTACTCCATACTTGTAGGGTGCCCT
LOC_Os03g55870
Os.17653.1.S1_at--733--5991Chr03:31742584..31742716 (25 bp)
GAGACTGGGTCCTGGCAATACTTTC
LOC_Os03g55870
Os.17653.1.S1_at--933--3171Chr03:31742707..31742731 (25 bp)
CAATACTTTCACTAGCAGCTGCCAG
LOC_Os03g55870
Os.17653.1.S1_at--46--2871Chr03:31742735..31742759 (25 bp)
AAGTGCGGCGGTCATCGATCTTCTG
LOC_Os03g55870
Os.17653.1.S1_at--487--6431Chr03:31742751..31742775 (25 bp)
GATCTTCTGCTCCAATTCCATGGAT
LOC_Os03g55870
Os.17653.1.S1_at--55--871Chr03:31742823..31742847 (25 bp)
ATGGCTTTCTTGTCCTGGTTCCTAA
LOC_Os03g55870
Os.17653.1.S1_at--14--7771Chr03:31742890..31742914 (25 bp)
GGTGACCACTGCTGATTGCTGATTC
LOC_Os03g55870
Os.17653.1.S1_at--691--9111Chr03:31742906..31742930 (25 bp)
TGCTGATTCTGGATTACGCCCTAAC
LOC_Os03g55870
Target Sequence 
GGCGTCGAGTTCTTCAGCTATACTGCCTTCTGCTTCCTAGTTACAATAATGGGCTTGGTGATCCCCTGGAGCTGTACACT
CGCCATGATCGACGTGTACTCCATACTTGTAGGGTGCCCTCTTCGGGTACCAGGTGTCATGGTCATTGTCGTCATCGGAG
ACTGGGTCCTGGCAATACTTTCACTAGCAGCTGCCAGCTCAAGTGCGGCGGTCATCGATCTTCTGCTCCAATTCCATGGA
TCTCACTGCTCTCCCAGATTCTGTGGGAGGTATCAGCTGTCGGCGATGATGGCTTTCTTGTCCTGGTTCCTAACGGCCGC
TTCCTCACTCTTCAACCTCTGGTTCATCGCCTCCCGGTGACCACTGCTGATTGCTGATTCTGGATTACGCCCTAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17653.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis