Browse Element(s) Details


OsAffx.3617.1.S1_at

Description tigr:9631.m05457
TID=OsAffx.3617.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5589011/11ternary complex factor MIP1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55870Os.17653.1.S1_at11/113+31741251..31743092integral membrane protein, putative, expressed
LOC_Os03g55874OsAffx.30475.9.S1_s_at11/113+31758639..31759900ATP synthase beta chain, putative
LOC_Os03g55874OsAffx.30475.1.S1_s_at11/113+31758639..31759900ATP synthase beta chain, putative
LOC_Os03g55874OsAffx.30475.5.S1_x_at10/113+31758639..31759900ATP synthase beta chain, putative
LOC_Os03g55880NANA3+31763214..31763636hypothetical protein
LOC_Os03g55890OsAffx.3617.1.S1_at11/113+31764449..31768626ternary complex factor MIP1, putative, expressed
LOC_Os03g55920OsAffx.13499.1.S1_at11/113+31779680..31783343hypothetical protein
LOC_Os03g55930Os.4177.1.S1_at10/113+31784349..3178617930S ribosomal protein S9, chloroplast precursor, putative, expressed
LOC_Os03g55940OsAffx.3620.1.S1_at11/113+31788253..31788867hypothetical protein
LOC_Os03g55950Os.15251.1.S1_at9/113+31792873..31796791f13j11 PRLI-interacting factor G, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3617.1.S1_at--1052--6891Chr03:31765782..31765806 (25 bp)
GTATGGCGTCCCACAGAACAATCTG
LOC_Os03g55890
OsAffx.3617.1.S1_at--262--6331Chr03:31765578..31765602 (25 bp)
GATGCAACACATACTGTCCTGGACA
LOC_Os03g55890
OsAffx.3617.1.S1_at--513--7191Chr03:31765454..31765587 (25 bp)
GTCCTGGACAGTGGTTACGTACTTT
LOC_Os03g55890
OsAffx.3617.1.S1_at--855--7011Chr03:31765436..31765460 (25 bp)
GTACTTTGCTTCACCCAAGGATCAA
LOC_Os03g55890
OsAffx.3617.1.S1_at--971--2651Chr03:31765379..31765403 (25 bp)
AAGCCTTTGCCGTTGCACAATCAGA
LOC_Os03g55890
OsAffx.3617.1.S1_at--420--3071Chr03:31765361..31765385 (25 bp)
AATCAGAGCCTCTTTTACGCTTTGC
LOC_Os03g55890
OsAffx.3617.1.S1_at--513--10451Chr03:31765347..31765371 (25 bp)
TTACGCTTTGCGCTTTGTTCAGGAA
LOC_Os03g55890
OsAffx.3617.1.S1_at--1051--2652Chr07:1797810..1797847 (24 bp)
AAGCCATTCTGATCCCGCGGTGAGA
NONE
OsAffx.3617.1.S1_at--800--2351Chr03:31764824..31764848 (25 bp)
AAAGCTCGTCGAGGCGTATGCGAAA
LOC_Os03g55890
OsAffx.3617.1.S1_at--378--3471Chr03:31764781..31764805 (25 bp)
CAGGGCCTTGTCGACATGGTGCAGC
LOC_Os03g55890
OsAffx.3617.1.S1_at--382--7791Chr03:31764683..31764707 (25 bp)
GGTGCCTCATAACCTGAATTTCCGG
LOC_Os03g55890
Target Sequence 
GTATGGCGTCCCACAGAACAATCTGAAGAAGACATCACTTCTTGTTAAGGCTGCCTGCAAAATTGCTGGACGGAGCATCA
ATGTAGCTGTTATCCAGAGCATGGTTCTTGGATGCAACACATACTGTCCTGGACAGTGGTTACGTACTTTGCTTCACCCA
AGGATCAAAAGCAAAGTGGGCAAAGTAGGGCATGTGTGGCAAGCCTTTGCCGTTGCACAATCAGAGCCTCTTTTACGCTT
TGCGCTTTGTTCAGGAAGCCATTCTGATCCCGCGGTGAGAGTGTACACTCCAAAGAGGCTGTTCCATCAACTGGAGGCTG
CCAAGGAGGAGTTCATCCGGGCAACGGTGGGCATCTGGAAGGAGCAGAAAATACTGCTTCCAAAGCTCGTCGAGGCGTAT
GCGAAAGACGTCAAGCTCTCGTCGCAGGGCCTTGTCGACATGGTGCAGCGCTACCTCCCGGAGAGCTTGAGGATGGCAAT
GCAGAAGTGCCAGCAGAGCAGATCCAGCAAGATCATAGAATGGGTGCCTCATAACCTGAATTTCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3617.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis