Browse Element(s) Details


Os.4177.1.S1_at

Description gb:AB022675.1
DB_XREF= gi:5456937
GEN=rps9
TID=Os.4177.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.4177 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) rps9 mRNA for ribosomal protein S9, complete cds.
PROD=ribosomal protein S9
FL= gb:AK104434.1 gb:AB022675.1 gb:AK060503.1 gb:AK068283.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5593010/1130S ribosomal protein S9, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55874OsAffx.30475.9.S1_s_at11/113+31758639..31759900ATP synthase beta chain, putative
LOC_Os03g55874OsAffx.30475.1.S1_s_at11/113+31758639..31759900ATP synthase beta chain, putative
LOC_Os03g55874OsAffx.30475.5.S1_x_at10/113+31758639..31759900ATP synthase beta chain, putative
LOC_Os03g55880NANA3+31763214..31763636hypothetical protein
LOC_Os03g55890OsAffx.3617.1.S1_at11/113+31764449..31768626ternary complex factor MIP1, putative, expressed
LOC_Os03g55920OsAffx.13499.1.S1_at11/113+31779680..31783343hypothetical protein
LOC_Os03g55930Os.4177.1.S1_at10/113+31784349..3178617930S ribosomal protein S9, chloroplast precursor, putative, expressed
LOC_Os03g55940OsAffx.3620.1.S1_at11/113+31788253..31788867hypothetical protein
LOC_Os03g55950Os.15251.1.S1_at9/113+31792873..31796791f13j11 PRLI-interacting factor G, putative, expressed
LOC_Os03g55960Os.9049.1.S1_at10/113+31797473..31798395EF hand family protein, expressed
LOC_Os03g55970Os.17075.1.S1_at11/113+31799392..31802303ResB-like family protein, expressed
LOC_Os03g55970Os.9781.1.S1_x_at1/113+31799392..31802303ResB-like family protein, expressed
LOC_Os03g55970Os.57396.1.S1_at1/113+31799392..31802303ResB-like family protein, expressed
LOC_Os03g55970Os.9781.1.S1_at1/113+31799392..31802303ResB-like family protein, expressed
LOC_Os03g55980Os.11256.1.S1_at11/113+31806155..31806828expressed protein
LOC_Os03g55990Os.38340.1.S1_at11/113+31808092..31810462Homeobox domain containing protein, expressed
LOC_Os03g55990Os.39943.1.S1_s_at11/113+31808092..31810462Homeobox domain containing protein, expressed
LOC_Os03g55990Os.39943.2.A1_x_at10/113+31808092..31810462Homeobox domain containing protein, expressed
LOC_Os03g55990Os.39943.2.A1_at8/113+31808092..31810462Homeobox domain containing protein, expressed
LOC_Os03g55990Os.39943.1.S1_x_at5/113+31808092..31810462Homeobox domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0000312cellular_componentplastid small ribosomal subunit
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4177.1.S1_at--1047--371NONE
ATCAACTTCCGCGATGCCAAGGAGT
NONE
Os.4177.1.S1_at--1086--6071Chr03:31784819..31784843 (25 bp)
GAGTACTGCAAGGTACCCCTGGTGA
LOC_Os03g55930
Os.4177.1.S1_at--62--7371Chr03:31784798..31784822 (25 bp)
GTGACCCTAGGGTTCGAGAACAGCT
LOC_Os03g55930
Os.4177.1.S1_at--727--5971Chr03:31784783..31784807 (25 bp)
GAGAACAGCTACGACGTCTTCGTCA
LOC_Os03g55930
Os.4177.1.S1_at--1043--7231Chr03:31784708..31784732 (25 bp)
GTCGCCCGTGCACTGGTGAAGATCA
LOC_Os03g55930
Os.4177.1.S1_at--244--6851Chr03:31784650..31784674 (25 bp)
GTTTGCTGACAAGAGACACCCGTAT
LOC_Os03g55930
Os.4177.1.S1_at--825--1651Chr03:31784587..31784611 (25 bp)
AGCGCCCGCAGTTCTCAAAGCGTTA
LOC_Os03g55930
Os.4177.1.S1_at--285--3311Chr03:31784515..31784539 (25 bp)
CACAGTTTGTATTGGCCCTTCTCTG
LOC_Os03g55930
Os.4177.1.S1_at--862--4311Chr03:31784499..31784523 (25 bp)
CCTTCTCTGTTATTTTCTGTGCAAA
LOC_Os03g55930
Os.4177.1.S1_at--1072--7331Chr03:31784481..31784505 (25 bp)
GTGCAAATTATGTGCTCCTCACCAC
LOC_Os03g55930
Os.4177.1.S1_at--160--5691Chr03:31784455..31784479 (25 bp)
GACTTGTAATCTTCGTTCTCTGTAA
LOC_Os03g55930
Target Sequence 
ATCAACTTCCGCGATGCCAAGGAGTATTTGCAAGGAAATCCAATGTGGATGGAGTACTGCAAGGTACCCCTGGTGACCCT
AGGGTTCGAGAACAGCTACGACGTCTTCGTCAAAGTTCACGGGGGTGGTCTCTCGGGCCAAGCCCAGGCCATTTGCCTCG
GCGTCGCCCGTGCACTGGTGAAGATCAGCACCGCAAACAAAGTTACTCTGAGGGGAGAAGGTTTGCTGACAAGAGACACC
CGTATAGTNGAAAGGAAGAAGGCTGGTCTTAAGAAGGCACGCAAGCGCCCGCAGTTCTCAAAGCGTTAGAGTATGCACAA
CCTTGTTGTTAGACTCATTTAAAAGTTTTACATTCCACAGTTTGTATTGGCCCTTCTCTGTTATTTTCTGTGCAAATTAT
GTGCTCCTCACCACAGACTTGTAATCTTCGTTCTCTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4177.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis