Browse Element(s) Details


Os.9049.1.S1_at

Description gb:AK107501.1
DB_XREF= gi:32992710
TID=Os.9049.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9049 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-E01, full insert sequence.
FL= gb:AK107501.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5596010/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55920OsAffx.13499.1.S1_at11/113+31779680..31783343hypothetical protein
LOC_Os03g55930Os.4177.1.S1_at10/113+31784349..3178617930S ribosomal protein S9, chloroplast precursor, putative, expressed
LOC_Os03g55940OsAffx.3620.1.S1_at11/113+31788253..31788867hypothetical protein
LOC_Os03g55950Os.15251.1.S1_at9/113+31792873..31796791f13j11 PRLI-interacting factor G, putative, expressed
LOC_Os03g55960Os.9049.1.S1_at10/113+31797473..31798395EF hand family protein, expressed
LOC_Os03g55970Os.17075.1.S1_at11/113+31799392..31802303ResB-like family protein, expressed
LOC_Os03g55970Os.9781.1.S1_x_at1/113+31799392..31802303ResB-like family protein, expressed
LOC_Os03g55970Os.57396.1.S1_at1/113+31799392..31802303ResB-like family protein, expressed
LOC_Os03g55970Os.9781.1.S1_at1/113+31799392..31802303ResB-like family protein, expressed
LOC_Os03g55980Os.11256.1.S1_at11/113+31806155..31806828expressed protein
LOC_Os03g55990Os.38340.1.S1_at11/113+31808092..31810462Homeobox domain containing protein, expressed
LOC_Os03g55990Os.39943.1.S1_s_at11/113+31808092..31810462Homeobox domain containing protein, expressed
LOC_Os03g55990Os.39943.2.A1_x_at10/113+31808092..31810462Homeobox domain containing protein, expressed
LOC_Os03g55990Os.39943.2.A1_at8/113+31808092..31810462Homeobox domain containing protein, expressed
LOC_Os03g55990Os.39943.1.S1_x_at5/113+31808092..31810462Homeobox domain containing protein, expressed
LOC_Os03g56000Os.26557.1.A1_at11/113+31814055..31817328hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9049.1.S1_at--954--4471Chr03:31797961..31797985 (25 bp)
GCCGGATTCGTTGCCCTGATGGAGA
LOC_Os03g55960
Os.9049.1.S1_at--957--2771Chr03:31797921..31797945 (25 bp)
AAGAGGACCTGAGGAGCGCCTTCGA
LOC_Os03g55960
Os.9049.1.S1_at--559--951Chr03:31797910..31797934 (25 bp)
AGGAGCGCCTTCGAGGTGTTCAACG
LOC_Os03g55960
Os.9049.1.S1_at--154--711Chr03:31797793..31797817 (25 bp)
ATGATCAGGGCCTACGACGTCGACG
LOC_Os03g55960
Os.9049.1.S1_at--467--5691Chr03:31797754..31797778 (25 bp)
GACTTCCATGAGTTCCAGAGGATGA
LOC_Os03g55960
Os.9049.1.S1_at--875--831Chr03:31797717..31797741 (25 bp)
ATGGAATGCCTCAGCTTGAAGCTGC
LOC_Os03g55960
Os.9049.1.S1_at--275--3751Chr03:31797676..31797700 (25 bp)
CTCAGCGAGGTGTTTTTCAGTTTCA
LOC_Os03g55960
Os.9049.1.S1_at--608--2851Chr03:31797611..31797635 (25 bp)
AAGTCTGCTGCATCCAGATGACACA
LOC_Os03g55960
Os.9049.1.S1_at--884--9651Chr03:31797555..31797579 (25 bp)
TCAGAGCTCTTTTGCTTGCCTGGAG
LOC_Os03g55960
Os.9049.1.S1_at--16--7751Chr03:31797500..31797524 (25 bp)
GGTGTGCCACACACTTAATCCAGTG
LOC_Os03g55960
Os.9049.1.S1_at--659--6771Chr03:31797465..31797489 (25 bp)
GTTACAGTTGATTTCCTTCTTTCAA
NONE
Target Sequence 
GCCGGATTCGTTGCCCTGATGGAGAGAGGTGACAGCCAAGAAGAGGACCTGAGGAGCGCCTTCGAGGTGTTCAACGCCGT
CGAGTCCGCCGGCCGGATCACGGCGAGGGGCCTGCAGAGGGTGCTCGCGCAGCTCGGTGACGAGCGGTCGGTCGCCGACT
GCGAGGCCATGATCAGGGCCTACGACGTCGACGGCGACGGCGGCCTCGACTTCCATGAGTTCCAGAGGATGATGAGCTAA
GTCCATGGAATGCCTCAGCTTGAAGCTGCTACAGCGAGTGAGTGACTCAGCGAGGTGTTTTTCAGTTTCAGAGTCCTGAG
AAAATTATACTGCTACTATAGGTTGTTGATAAGTCTGCTGCATCCAGATGACACATTGCAGATTGTTTACAGGGCAGAAG
AGTTCTTCAGAGCTCTTTTGCTTGCCTGGAGCAAATTTGTTGTTGTCATCTTGAGTTGTTTGGTGTGCCACACACTTAAT
CCAGTGTATCAGTAAAGTTACAGTTGATTTCCTTCTTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9049.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis