Browse Element(s) Details

Os.26557.1.A1_at

Description

gb:CB674059
DB_XREF= gi:29677784
DB_XREF=OSJNEe08O21.r
CLONE=OSJNEe08O21
TID=Os.26557.1
CNT=12
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.26557 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_563862.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g56000	11/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g55950	Os.15251.1.S1_at	9/11	3	+	31792873..31796791	f13j11 PRLI-interacting factor G, putative, expressed
LOC_Os03g55960	Os.9049.1.S1_at	10/11	3	+	31797473..31798395	EF hand family protein, expressed
LOC_Os03g55970	Os.17075.1.S1_at	11/11	3	+	31799392..31802303	ResB-like family protein, expressed
LOC_Os03g55970	Os.9781.1.S1_x_at	1/11	3	+	31799392..31802303	ResB-like family protein, expressed
LOC_Os03g55970	Os.57396.1.S1_at	1/11	3	+	31799392..31802303	ResB-like family protein, expressed
LOC_Os03g55970	Os.9781.1.S1_at	1/11	3	+	31799392..31802303	ResB-like family protein, expressed
LOC_Os03g55980	Os.11256.1.S1_at	11/11	3	+	31806155..31806828	expressed protein
LOC_Os03g55990	Os.38340.1.S1_at	11/11	3	+	31808092..31810462	Homeobox domain containing protein, expressed
LOC_Os03g55990	Os.39943.1.S1_s_at	11/11	3	+	31808092..31810462	Homeobox domain containing protein, expressed
LOC_Os03g55990	Os.39943.2.A1_x_at	10/11	3	+	31808092..31810462	Homeobox domain containing protein, expressed
LOC_Os03g55990	Os.39943.2.A1_at	8/11	3	+	31808092..31810462	Homeobox domain containing protein, expressed
LOC_Os03g55990	Os.39943.1.S1_x_at	5/11	3	+	31808092..31810462	Homeobox domain containing protein, expressed
LOC_Os03g56000	Os.26557.1.A1_at	11/11	3	+	31814055..31817328	hypothetical protein
LOC_Os03g56010	OsAffx.25727.1.S1_at	11/11	3	+	31824100..31824555	bZIP transcription factor family protein
LOC_Os03g56020	Os.55771.1.S1_at	11/11	3	+	31827304..31835347	RNA recognition motif family protein, expressed
LOC_Os03g56020	OsAffx.13500.1.S1_at	11/11	3	+	31827304..31835347	RNA recognition motif family protein, expressed
LOC_Os03g56030	OsAffx.25728.1.S1_at	11/11	3	+	31836993..31839169	hypothetical protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.26557.1.A1_at--1024--491	1	Chr03:31814936..31814960 (25 bp)	GCTTGATGTTACTGGTAGAGTTACA	LOC_Os03g56000
Os.26557.1.A1_at--720--605	1	Chr03:31814953..31814977 (25 bp)	GAGTTACATTTGAGACAGTGAGGTC	LOC_Os03g56000
Os.26557.1.A1_at--634--111	1	Chr03:31814969..31814993 (25 bp)	AGTGAGGTCGTTCCTTGAGTTCGCA	LOC_Os03g56000
Os.26557.1.A1_at--627--669	1	Chr03:31814978..31815002 (25 bp)	GTTCCTTGAGTTCGCACTGTGGAAA	LOC_Os03g56000
Os.26557.1.A1_at--306--515	1	Chr03:31815028..31815052 (25 bp)	GCAACACAGTGATGGATAGCGGACT	LOC_Os03g56000
Os.26557.1.A1_at--1026--35	1	Chr03:31815076..31815100 (25 bp)	ATAAGTCTATGGTTATCGCCACAAT	LOC_Os03g56000
Os.26557.1.A1_at--103--441	1	Chr03:31815093..31815117 (25 bp)	GCCACAATATGCATTACACTTTGTT	LOC_Os03g56000
Os.26557.1.A1_at--427--499	1	Chr03:31815119..31815143 (25 bp)	GCATGTTTTGAATGGCACTCGGCTC	LOC_Os03g56000
Os.26557.1.A1_at--1144--331	1	Chr03:31815134..31815158 (25 bp)	CACTCGGCTCCTGGTAACAGCTTGA	LOC_Os03g56000
Os.26557.1.A1_at--630--247	1	Chr03:31815175..31815199 (25 bp)	AACACGGGTGTATTTGGATTGCATT	LOC_Os03g56000
Os.26557.1.A1_at--506--793	1	Chr03:31815190..31815214 (25 bp)	GGATTGCATTGTTGGTACATGACTT	LOC_Os03g56000

Target Sequence

GCTTGATGTTACTGGTAGAGTTACATTTGAGACAGTGAGGTCGTTCCTTGAGTTCGCACTGTGGAAAATGCACGCTGGGG
CNAAGAAGGGTGGCAACACAGTGATGGATAGCGGACTGCGCGCGATGCANTACATGACTGATAAGTCTATGGTTATCGCC
ACAATATGCATTACACTTTGTTTGCATGTTTTGAATGGCACTCGGCTCCTGGTAACAGCTTGATGATGTGTTCAAGATCA
ACACGGGTGTATTTGGATTGCATTGTTGGTACATGACTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis