Browse Element(s) Details


OsAffx.13500.1.S1_at

Description tigr:9631.m05472
TID=OsAffx.13500.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative RNA binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5602011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55980Os.11256.1.S1_at11/113+31806155..31806828expressed protein
LOC_Os03g55990Os.38340.1.S1_at11/113+31808092..31810462Homeobox domain containing protein, expressed
LOC_Os03g55990Os.39943.1.S1_s_at11/113+31808092..31810462Homeobox domain containing protein, expressed
LOC_Os03g55990Os.39943.2.A1_x_at10/113+31808092..31810462Homeobox domain containing protein, expressed
LOC_Os03g55990Os.39943.2.A1_at8/113+31808092..31810462Homeobox domain containing protein, expressed
LOC_Os03g55990Os.39943.1.S1_x_at5/113+31808092..31810462Homeobox domain containing protein, expressed
LOC_Os03g56000Os.26557.1.A1_at11/113+31814055..31817328hypothetical protein
LOC_Os03g56010OsAffx.25727.1.S1_at11/113+31824100..31824555bZIP transcription factor family protein
LOC_Os03g56020Os.55771.1.S1_at11/113+31827304..31835347RNA recognition motif family protein, expressed
LOC_Os03g56020OsAffx.13500.1.S1_at11/113+31827304..31835347RNA recognition motif family protein, expressed
LOC_Os03g56030OsAffx.25728.1.S1_at11/113+31836993..31839169hypothetical protein
LOC_Os03g56040Os.19099.1.S1_x_at1/113+31849671..31851842retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13500.1.S1_at--124--9551Chr03:31828628..31828652 (25 bp)
TCTTTGTTGGTGGTTTGCACGAAAC
LOC_Os03g56020
OsAffx.13500.1.S1_at--292--2391Chr03:31828649..31828673 (25 bp)
AAACTGTTACAGTGAAGGACCTCAT
LOC_Os03g56020
OsAffx.13500.1.S1_at--997--5571Chr03:31828686..31828710 (25 bp)
GAAATTTGGCACCATAACGGATGCT
LOC_Os03g56020
OsAffx.13500.1.S1_at--609--9811Chr03:31828700..31828724 (25 bp)
TAACGGATGCTGTGGTCATGCGTAA
LOC_Os03g56020
OsAffx.13500.1.S1_at--441--6251Chr03:31828828..31828852 (25 bp)
GATGTCGAAGTTAAAATTGCCGTCC
LOC_Os03g56020
OsAffx.13500.1.S1_at--912--9811Chr03:31828839..31828863 (25 bp)
TAAAATTGCCGTCCCAAAGAGTCCA
LOC_Os03g56020
OsAffx.13500.1.S1_at--283--2791Chr03:31828855..31828879 (25 bp)
AAGAGTCCAACCTACTCAGAGGCAA
LOC_Os03g56020
OsAffx.13500.1.S1_at--333--8211Chr03:31828933..31828957 (25 bp)
GGAATGGTCCATGTCCATCCATACA
LOC_Os03g56020
OsAffx.13500.1.S1_at--514--3531Chr03:31828948..31828972 (25 bp)
CATCCATACACACCATACACATTTG
LOC_Os03g56020
OsAffx.13500.1.S1_at--183--2091Chr03:31828966..31828990 (25 bp)
ACATTTGGCTGTGTTACACCTCTTG
LOC_Os03g56020
OsAffx.13500.1.S1_at--45--9591Chr03:31828986..31829010 (25 bp)
TCTTGCTCACTTAACTCATTCAGGT
LOC_Os03g56020
Target Sequence 
TCTTTGTTGGTGGTTTGCACGAAACTGTTACAGTGAAGGACCTCATAAGTTATTTTGAGAAATTTGGCACCATAACGGAT
GCTGTGGTCATGCGTAATAGAACTACAAATAGAGCAAGGGGATTTGGTTTCATATCTTTTGATTCACATGAAGCTGTGTG
CAAGATACTACTAAATAGGTTCCATAATTTAAATGGAAGGGATGTCGAAGTTAAAATTGCCGTCCCAAAGAGTCCAACCT
ACTCAGAGGCAAAATATTATCACATGAGAATGGATATGAGTTTAAGTCCTATCACTTATTATGATGGAATGGTCCATGTC
CATCCATACACACCATACACATTTGGCTGTGTTACACCTCTTGCTCACTTAACTCATTCAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13500.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis