Browse Element(s) Details


Os.55771.1.S1_at

Description gb:AK108776.1
DB_XREF= gi:32993985
TID=Os.55771.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55771 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-150-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-150-H12, full insert sequence.
FL= gb:AK108776.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5602011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55980Os.11256.1.S1_at11/113+31806155..31806828expressed protein
LOC_Os03g55990Os.38340.1.S1_at11/113+31808092..31810462Homeobox domain containing protein, expressed
LOC_Os03g55990Os.39943.1.S1_s_at11/113+31808092..31810462Homeobox domain containing protein, expressed
LOC_Os03g55990Os.39943.2.A1_x_at10/113+31808092..31810462Homeobox domain containing protein, expressed
LOC_Os03g55990Os.39943.2.A1_at8/113+31808092..31810462Homeobox domain containing protein, expressed
LOC_Os03g55990Os.39943.1.S1_x_at5/113+31808092..31810462Homeobox domain containing protein, expressed
LOC_Os03g56000Os.26557.1.A1_at11/113+31814055..31817328hypothetical protein
LOC_Os03g56010OsAffx.25727.1.S1_at11/113+31824100..31824555bZIP transcription factor family protein
LOC_Os03g56020Os.55771.1.S1_at11/113+31827304..31835347RNA recognition motif family protein, expressed
LOC_Os03g56020OsAffx.13500.1.S1_at11/113+31827304..31835347RNA recognition motif family protein, expressed
LOC_Os03g56030OsAffx.25728.1.S1_at11/113+31836993..31839169hypothetical protein
LOC_Os03g56040Os.19099.1.S1_x_at1/113+31849671..31851842retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55771.1.S1_at--312--4811Chr03:31834777..31834801 (25 bp)
GCTCGTCCACGAGATGTGCTGGTAG
LOC_Os03g56020
Os.55771.1.S1_at--517--2191Chr03:31835021..31835045 (25 bp)
ACACAGCGGGCAGATTCCGGTGGAT
LOC_Os03g56020
Os.55771.1.S1_at--1148--71Chr03:31835034..31835058 (25 bp)
ATTCCGGTGGATCAGAGAGTATTCA
LOC_Os03g56020
Os.55771.1.S1_at--1141--8231Chr03:31835082..31835106 (25 bp)
GGCATGGGCCCCACTGATGGTAAGC
LOC_Os03g56020
Os.55771.1.S1_at--839--4931Chr03:31835159..31835183 (25 bp)
GCTTGGCCATCTAGATTGTAAGTCT
LOC_Os03g56020
Os.55771.1.S1_at--384--31Chr03:31835173..31835197 (25 bp)
ATTGTAAGTCTGTTGGAATCCATTT
LOC_Os03g56020
Os.55771.1.S1_at--382--2471Chr03:31835241..31835265 (25 bp)
AACACTGCTGAAGATGCTTACTCCT
LOC_Os03g56020
Os.55771.1.S1_at--579--6331Chr03:31835253..31835277 (25 bp)
GATGCTTACTCCTATGTTTAATGAA
LOC_Os03g56020
Os.55771.1.S1_at--42--8471Chr03:31835289..31835313 (25 bp)
TGGCGCTGTAAATGTCACTTCTCTC
LOC_Os03g56020
Os.55771.1.S1_at--1008--7091Chr03:31835302..31835326 (25 bp)
GTCACTTCTCTCTTAAACTAGTCGC
LOC_Os03g56020
Os.55771.1.S1_at--1027--2511Chr03:31835317..31835341 (25 bp)
AACTAGTCGCGCTGTAAATGGCATT
LOC_Os03g56020
Target Sequence 
GCTCGTCCACGAGATGTGCTGGTAGGAGGCGCCGGTCCCTTATTTCCTCTGCCATCAGCACAACCCCCTACGGCGCCGGC
TTGGAGATCGGGCGGAGGCTTCCCAAGACGATGACGCCTCTTGCTCCTTCCTTCCATGGCTTCGGTTGGGACGATACGAG
ACGGTAACGGACGAGGACGTAGGCAGTGGAGGCGGTGACCCGGCGGGCGGGAGGCCTCTCCGTCCACTGGCGGAAGAGGC
GACGACACAGCGGGCAGATTCCGGTGGATCAGAGAGTATTCAGGGAAAGAGAGATAGGGGAAGAAGGCATGGGCCCCACT
GATGGTAAGCCGGCTTTGGCTGGCCATGTTTGGTTAGTGAAGGAGGTTTGGCTAGGGAGATGGCTTGGCCATCTAGATTG
TAAGTCTGTTGGAATCCATTTTTTATTTAAAATTGTTAAATTTTGATTTGGAGAGTAGGATAGCAACACTGCTGAAGATG
CTTACTCCTATGTTTAATGAAGCAGAAACTAGTGGCGCTGTAAATGTCACTTCTCTCTTAAACTAGTCGCGCTGTAAATG
GCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55771.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis