Browse Element(s) Details


Os.11256.1.S1_at

Description gb:AK063727.1
DB_XREF= gi:32973745
TID=Os.11256.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11256 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-120-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-120-E01, full insert sequence.
FL= gb:AK063727.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5598011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55920OsAffx.13499.1.S1_at11/113+31779680..31783343hypothetical protein
LOC_Os03g55930Os.4177.1.S1_at10/113+31784349..3178617930S ribosomal protein S9, chloroplast precursor, putative, expressed
LOC_Os03g55940OsAffx.3620.1.S1_at11/113+31788253..31788867hypothetical protein
LOC_Os03g55950Os.15251.1.S1_at9/113+31792873..31796791f13j11 PRLI-interacting factor G, putative, expressed
LOC_Os03g55960Os.9049.1.S1_at10/113+31797473..31798395EF hand family protein, expressed
LOC_Os03g55970Os.17075.1.S1_at11/113+31799392..31802303ResB-like family protein, expressed
LOC_Os03g55970Os.9781.1.S1_x_at1/113+31799392..31802303ResB-like family protein, expressed
LOC_Os03g55970Os.57396.1.S1_at1/113+31799392..31802303ResB-like family protein, expressed
LOC_Os03g55970Os.9781.1.S1_at1/113+31799392..31802303ResB-like family protein, expressed
LOC_Os03g55980Os.11256.1.S1_at11/113+31806155..31806828expressed protein
LOC_Os03g55990Os.38340.1.S1_at11/113+31808092..31810462Homeobox domain containing protein, expressed
LOC_Os03g55990Os.39943.1.S1_s_at11/113+31808092..31810462Homeobox domain containing protein, expressed
LOC_Os03g55990Os.39943.2.A1_x_at10/113+31808092..31810462Homeobox domain containing protein, expressed
LOC_Os03g55990Os.39943.2.A1_at8/113+31808092..31810462Homeobox domain containing protein, expressed
LOC_Os03g55990Os.39943.1.S1_x_at5/113+31808092..31810462Homeobox domain containing protein, expressed
LOC_Os03g56000Os.26557.1.A1_at11/113+31814055..31817328hypothetical protein
LOC_Os03g56010OsAffx.25727.1.S1_at11/113+31824100..31824555bZIP transcription factor family protein
LOC_Os03g56020Os.55771.1.S1_at11/113+31827304..31835347RNA recognition motif family protein, expressed
LOC_Os03g56020OsAffx.13500.1.S1_at11/113+31827304..31835347RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11256.1.S1_at--733--7971Chr03:31806635..31806659 (25 bp)
GGATCGCTCACTGTCACAGGAAGGT
LOC_Os03g55980
Os.11256.1.S1_at--233--7811Chr03:31806689..31806713 (25 bp)
GGTCGTGCTCGCGACGGTGTTCATC
LOC_Os03g55980
Os.11256.1.S1_at--373--7751Chr03:31806704..31806728 (25 bp)
GGTGTTCATCGCCATTAATGGTCTT
LOC_Os03g55980
Os.11256.1.S1_at--523--3591Chr03:31806716..31806740 (25 bp)
CATTAATGGTCTTCTCTGGAGGTCT
LOC_Os03g55980
Os.11256.1.S1_at--116--7151Chr03:31806724..31806748 (25 bp)
GTCTTCTCTGGAGGTCTAGTAGCCA
LOC_Os03g55980
Os.11256.1.S1_at--333--8011Chr03:31806733..31806757 (25 bp)
GGAGGTCTAGTAGCCATTCAAACTT
LOC_Os03g55980
Os.11256.1.S1_at--903--6951Chr03:31806742..31806766 (25 bp)
GTAGCCATTCAAACTTTGGGATTTT
LOC_Os03g55980
Os.11256.1.S1_at--432--7671Chr03:31806759..31806783 (25 bp)
GGGATTTTGCGTTTGTAAATATGAT
LOC_Os03g55980
Os.11256.1.S1_at--384--6531Chr03:31806781..31806805 (25 bp)
GATTTTTGTTGAGAATTCGTGAGTC
LOC_Os03g55980
Os.11256.1.S1_at--305--111Chr03:31806795..31806819 (25 bp)
ATTCGTGAGTCGTAATTGCTATTTT
LOC_Os03g55980
Os.11256.1.S1_at--567--6091Chr03:31806801..31806825 (25 bp)
GAGTCGTAATTGCTATTTTTGCTGC
LOC_Os03g55980
Target Sequence 
GGATCGCTCACTGTCACAGGAAGGTGGCGGCCTTGGCCTGAGCTGCTGCCCGCCGGTCGTGCTCGCGACGGTGTTCATCG
CCATTAATGGTCTTCTCTGGAGGTCTAGTAGCCATTCAAACTTTGGGATTTTGCGTTTGTAAATATGATTTTTGTTGAGA
ATTCGTGAGTCGTAATTGCTATTTTTGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11256.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis