Browse Element(s) Details


Os.15251.1.S1_at

Description gb:AK068827.1
DB_XREF= gi:32978852
TID=Os.15251.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15251 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013162K08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013162K08, full insert sequence.
FL= gb:AK068827.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g559509/11f13j11 PRLI-interacting factor G, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55890OsAffx.3617.1.S1_at11/113+31764449..31768626ternary complex factor MIP1, putative, expressed
LOC_Os03g55920OsAffx.13499.1.S1_at11/113+31779680..31783343hypothetical protein
LOC_Os03g55930Os.4177.1.S1_at10/113+31784349..3178617930S ribosomal protein S9, chloroplast precursor, putative, expressed
LOC_Os03g55940OsAffx.3620.1.S1_at11/113+31788253..31788867hypothetical protein
LOC_Os03g55950Os.15251.1.S1_at9/113+31792873..31796791f13j11 PRLI-interacting factor G, putative, expressed
LOC_Os03g55960Os.9049.1.S1_at10/113+31797473..31798395EF hand family protein, expressed
LOC_Os03g55970Os.17075.1.S1_at11/113+31799392..31802303ResB-like family protein, expressed
LOC_Os03g55970Os.9781.1.S1_x_at1/113+31799392..31802303ResB-like family protein, expressed
LOC_Os03g55970Os.57396.1.S1_at1/113+31799392..31802303ResB-like family protein, expressed
LOC_Os03g55970Os.9781.1.S1_at1/113+31799392..31802303ResB-like family protein, expressed
LOC_Os03g55980Os.11256.1.S1_at11/113+31806155..31806828expressed protein
LOC_Os03g55990Os.38340.1.S1_at11/113+31808092..31810462Homeobox domain containing protein, expressed
LOC_Os03g55990Os.39943.1.S1_s_at11/113+31808092..31810462Homeobox domain containing protein, expressed
LOC_Os03g55990Os.39943.2.A1_x_at10/113+31808092..31810462Homeobox domain containing protein, expressed
LOC_Os03g55990Os.39943.2.A1_at8/113+31808092..31810462Homeobox domain containing protein, expressed
LOC_Os03g55990Os.39943.1.S1_x_at5/113+31808092..31810462Homeobox domain containing protein, expressed
LOC_Os03g56000Os.26557.1.A1_at11/113+31814055..31817328hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15251.1.S1_at--898--5071Chr03:31796198..31796222 (25 bp)
GCAGCCTCTCATGGATGACTACAAC
LOC_Os03g55950
Os.15251.1.S1_at--817--7951Chr03:31796272..31796296 (25 bp)
GGATCGGGCGTACTATCTTGACACT
LOC_Os03g55950
Os.15251.1.S1_at--437--7951Chr03:31796357..31796381 (25 bp)
GGATAGCTGCCCCAATCTGCAGAAG
LOC_Os03g55950
Os.15251.1.S1_at--454--8191Chr03:31796398..31796422 (25 bp)
GGAAGAGGACTTTCGTGCGGCCTTA
LOC_Os03g55950
Os.15251.1.S1_at--519--10311Chr03:31796408..31796432 (25 bp)
TTTCGTGCGGCCTTATGTTGAACAA
LOC_Os03g55950
Os.15251.1.S1_at--379--1031Chr03:31796432..31796456 (25 bp)
AGGGAATCAATCTCAGCCGGGTCGG
LOC_Os03g55950
Os.15251.1.S1_at--10--7071Chr03:31796563..31796587 (25 bp)
GTAATGTCTTACTCGGTTTGCTGTT
LOC_Os03g55950
Os.15251.1.S1_at--1006--1171Chr03:31796631..31796655 (25 bp)
AGTACTTATCTTGCAAGGCTTGAGA
LOC_Os03g55950
Os.15251.1.S1_at--596--5231Chr03:31796654..31796678 (25 bp)
GAATATGTGCGCGTTGTGCTTCTGA
LOC_Os03g55950
Os.15251.1.S1_at--1140--191NONE
ATTTCCTTATCTGCTTGGTACTATC
NONE
Os.15251.1.S1_at--448--10171NONE
TATCATGACATCAGTTTGGTGCACT
NONE
Target Sequence 
GCAGCCTCTCATGGATGACTACAACTGGTTACAGCATGGNCTGCAGGNTCATTTGACCGCAAAGTTGTCGAGGAAGGGAT
CGGGCGTACTATCTTGACACTCCCGCTCGAGGATCAGCAGACGATATTGCTTTCNATGGCTCNGGGAGCTTCTTGAAGGT
TGGGGATAGCTGCCCCAATCTGCAGAAGGCCTTTGAGGTGTGGTGGAAGAGGACTTTCGTGCGGCCTTATGTTGAACAAG
GGAATCAATCTCAGCCGGGTCGGAGTTGAGGTCTCAAGTGGTTATAGACTGCAAGAAAAAATTGTCATCTTTTTTCATGT
AGAATATCACTGAGAAAGTAGTGGTAATGTCTTACTTTTTAGATAATGGGTAATGTCTTACTCGGTTTGCTGTTAGGGAG
AACCCCAGGAAATGAAAACAAAATGGGGATGTAAATTAGTACTTATCTTGCAAGGCTTGAGAATATGTGCGCGTTGTGCT
TCTGATGCTTCATTTTATCAAATATAAGTGAAGCTCTCTGAATTCTGGTTGCAGAATTTCCTTATCTGCTTGGTACTATC
ATGACATCAGTTTGGTGCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15251.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis