Browse Element(s) Details


OsAffx.25727.1.S1_at

Description tigr:9631.m05471
TID=OsAffx.25727.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative transcription factor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5601011/11bZIP transcription factor family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55970Os.17075.1.S1_at11/113+31799392..31802303ResB-like family protein, expressed
LOC_Os03g55970Os.9781.1.S1_x_at1/113+31799392..31802303ResB-like family protein, expressed
LOC_Os03g55970Os.57396.1.S1_at1/113+31799392..31802303ResB-like family protein, expressed
LOC_Os03g55970Os.9781.1.S1_at1/113+31799392..31802303ResB-like family protein, expressed
LOC_Os03g55980Os.11256.1.S1_at11/113+31806155..31806828expressed protein
LOC_Os03g55990Os.38340.1.S1_at11/113+31808092..31810462Homeobox domain containing protein, expressed
LOC_Os03g55990Os.39943.1.S1_s_at11/113+31808092..31810462Homeobox domain containing protein, expressed
LOC_Os03g55990Os.39943.2.A1_x_at10/113+31808092..31810462Homeobox domain containing protein, expressed
LOC_Os03g55990Os.39943.2.A1_at8/113+31808092..31810462Homeobox domain containing protein, expressed
LOC_Os03g55990Os.39943.1.S1_x_at5/113+31808092..31810462Homeobox domain containing protein, expressed
LOC_Os03g56000Os.26557.1.A1_at11/113+31814055..31817328hypothetical protein
LOC_Os03g56010OsAffx.25727.1.S1_at11/113+31824100..31824555bZIP transcription factor family protein
LOC_Os03g56020Os.55771.1.S1_at11/113+31827304..31835347RNA recognition motif family protein, expressed
LOC_Os03g56020OsAffx.13500.1.S1_at11/113+31827304..31835347RNA recognition motif family protein, expressed
LOC_Os03g56030OsAffx.25728.1.S1_at11/113+31836993..31839169hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25727.1.S1_at--756--4691Chr03:31824130..31824154 (25 bp)
GCGGCTGACACGTGCCCTACCTTGG
LOC_Os03g56010
OsAffx.25727.1.S1_at--751--8951Chr03:31824135..31824159 (25 bp)
TGACACGTGCCCTACCTTGGAGCAG
LOC_Os03g56010
OsAffx.25727.1.S1_at--16--1911Chr03:31824139..31824163 (25 bp)
ACGTGCCCTACCTTGGAGCAGCTGA
LOC_Os03g56010
OsAffx.25727.1.S1_at--766--7291Chr03:31824141..31824165 (25 bp)
GTGCCCTACCTTGGAGCAGCTGATG
LOC_Os03g56010
OsAffx.25727.1.S1_at--437--9171Chr03:31824142..31824166 (25 bp)
TGCCCTACCTTGGAGCAGCTGATGG
LOC_Os03g56010
OsAffx.25727.1.S1_at--206--7211Chr03:31824189..31824213 (25 bp)
GTCGTCGTCGCTTGATGACAACGCG
LOC_Os03g56010
OsAffx.25727.1.S1_at--314--9411Chr03:31824190..31824214 (25 bp)
TCGTCGTCGCTTGATGACAACGCGG
LOC_Os03g56010
OsAffx.25727.1.S1_at--157--7211Chr03:31824192..31824216 (25 bp)
GTCGTCGCTTGATGACAACGCGGCG
LOC_Os03g56010
OsAffx.25727.1.S1_at--727--9411Chr03:31824193..31824217 (25 bp)
TCGTCGCTTGATGACAACGCGGCGG
LOC_Os03g56010
OsAffx.25727.1.S1_at--186--4011Chr03:31824194..31824218 (25 bp)
CGTCGCTTGATGACAACGCGGCGGC
LOC_Os03g56010
OsAffx.25727.1.S1_at--302--8271Chr03:31824272..31824296 (25 bp)
GGCGGAAGGTGTCGAACCGGCTGTC
LOC_Os03g56010
Target Sequence 
GCGGCTGACACGTGCCCTACCTTGGAGCAGCTGATGGCGTCGTCCGCGTCGCCCTCGCCGTCGTCGTCGCTTGATGACAA
CGCGGCGGCGGCGGAGGAGGAGAACGGTGAGGTGGAGGAGGAGGAGGAGCGGAGGCGGCAGCGGCGGAAGGTGTCGAACC
GGCTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25727.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis