Browse Element(s) Details


Os.49951.1.S1_at

Description gb:AK119424.1
DB_XREF= gi:37989047
TID=Os.49951.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49951 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-132-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-132-H04, full insert sequence.
FL= gb:AK119424.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4869011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48660Os.57096.1.S1_at11/117+29143215..29145344bZIP transcription factor family protein, expressed
LOC_Os07g48670NANA7+29148147..29149634retrotransposon protein, putative, unclassified
LOC_Os07g48680Os.51359.1.S1_at10/117+29150852..29151741Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g48700OsAffx.28957.1.S1_at11/117+29154288..29160937expressed protein
LOC_Os07g48700OsAffx.4557.1.S1_s_at1/117+29154288..29160937expressed protein
LOC_Os07g48700OsAffx.2045.1.S1_x_at1/117+29154288..29160937expressed protein
LOC_Os07g48690Os.49951.1.S1_at11/117+29160723..29164881expressed protein
LOC_Os07g48710Os.4651.1.S1_at11/117+29169385..29170532VQ motif family protein, expressed
LOC_Os07g48720Os.52517.1.S1_at11/117+29172299..29176633RINT-1/TIP-1 family protein, expressed
LOC_Os07g48730Os.49354.1.S1_at11/117+29177968..29179798serine/threonine-protein kinase NAK, putative, expressed
LOC_Os07g48750Os.9163.1.S1_at2/117+29182003..29186422Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os07g48760OsAffx.16766.1.S1_at11/117+29188672..29192485CIPK-like protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49951.1.S1_at--951--8691Chr07:29164316..29164340 (25 bp)
TGTGCTGTTGCACCCATATTTACAA
LOC_Os07g48690
Os.49951.1.S1_at--188--8971Chr07:29164392..29164416 (25 bp)
TGAAAGCCATTGAAAATCTCGTTGC
LOC_Os07g48690
Os.49951.1.S1_at--202--471Chr07:29164407..29164431 (25 bp)
ATCTCGTTGCAGATGTCGGCCGTTC
LOC_Os07g48690
Os.49951.1.S1_at--1159--6671Chr07:29164428..29164452 (25 bp)
GTTCCTTTCCGCACCAAGAGCAGGT
LOC_Os07g48690
Os.49951.1.S1_at--497--3031Chr07:29164477..29164501 (25 bp)
AATCCTGAGAAATAATGCCCCTGCT
LOC_Os07g48690
Os.49951.1.S1_at--1058--591Chr07:29164491..29164515 (25 bp)
ATGCCCCTGCTGATGTACAGTCAAG
LOC_Os07g48690
Os.49951.1.S1_at--369--3451Chr07:29164508..29164532 (25 bp)
CAGTCAAGTCTGATGGCATTCTTAG
LOC_Os07g48690
Os.49951.1.S1_at--795--5412Chr07:29164541..29164565 (25 bp)
GAAGCCTTTTCAGCAGTTTCACTGC
LOC_Os07g48690
Os.49951.1.S1_at--664--1111Chr07:29164652..29164676 (25 bp)
AGTGAGCTCTTAGTAATATGGCCCC
LOC_Os07g48690
Os.49951.1.S1_at--670--6891Chr07:29164735..29164759 (25 bp)
GTATCGAGTCGTTTTGTCAGTTGTA
LOC_Os07g48690
Os.49951.1.S1_at--1045--731Chr07:29164761..29164785 (25 bp)
ATGTTTTGTGTAGTCTCTGGTGGGA
LOC_Os07g48690
Target Sequence 
TGTGCTGTTGCACCCATATTTACAACTTGCGAAATCTGGATTAAATTAATTGACGATTTACTGACCAATGAGTTGGTGAA
AGCCATTGAAAATCTCGTTGCAGATGTCGGCCGTTCCTTTCCGCACCAAGAGCAGGTGCTAAATGGTGAAACAGGAGGAG
AAATCCTGAGAAATAATGCCCCTGCTGATGTACAGTCAAGTCTGATGGCATTCTTAGAGAAGCTTGAAGCCTTTTCAGCA
GTTTCACTGCAGAAGTATATTGATCTGCAGAAAAACATCGACGAGGCAAAGGATAGGTTTTCGAGAGAAGATTAAAGTAC
GATTGCAAGTAGCTCAAGTGAGCTCTTAGTAATATGGCCCCCCTTGAGTTGGATGAGTAAAATGTTCCATATGTAAATTC
CTGGTTGTGATGATATTGTGTATCGAGTCGTTTTGTCAGTTGTAAATGTTTTGTGTAGTCTCTGGTGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49951.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis