Browse Element(s) Details


Os.4997.1.S1_s_at

Description gb:AF050674.1
DB_XREF= gi:2961175
TID=Os.4997.1
CNT=31
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.4997 (NCBI UniGene Cluster)
DEF=Oryza sativa ribosomal protein L27 precursor, mRNA, nuclear gene encoding chloroplast protein, complete cds.
PROD=ribosomal protein L27 precursor
FL= gb:AF050674.1 gb:AK061690.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6995011/1150S ribosomal protein L27, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g69930Os.54562.1.S1_at11/111+40765082..40769293DnaJ domain containing protein, expressed
LOC_Os01g69940Os.46432.1.S1_s_at11/111+40769786..40773120F-box family protein, putative, expressed
LOC_Os01g69940Os.5554.1.S1_at11/111+40769786..40773120F-box family protein, putative, expressed
LOC_Os01g69950Os.51456.1.S1_at11/111+40780707..4078352850S ribosomal protein L27, chloroplast precursor, putative, expressed
LOC_Os01g69950Os.4997.1.S1_s_at11/111+40780707..4078352850S ribosomal protein L27, chloroplast precursor, putative, expressed
LOC_Os01g69950Os.46403.1.S1_at8/111+40780707..4078352850S ribosomal protein L27, chloroplast precursor, putative, expressed
LOC_Os01g69960Os.23498.1.S1_at11/111+40786850..40788332expressed protein
LOC_Os01g69970Os.6419.1.S1_at11/111+40789858..40794608Periodic tryptophan protein 1 homolog, putative, expressed
LOC_Os01g69980Os.12146.1.S1_at10/111+40804089..40805984TCP family transcription factor containing protein, expressed
LOC_Os01g69980OsAffx.15397.1.S1_x_at1/111+40804089..40805984TCP family transcription factor containing protein, expressed
LOC_Os01g69984Os.51027.1.S1_at10/111+40805985..40806305NA

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4997.1.S1_s_at--197--7791Chr01:40780916..40780940 (25 bp)
GGTGCGGCGGCTGACGATCCAGATG
LOC_Os01g69950
Os.4997.1.S1_s_at--316--8351Chr01:40780921..40780945 (25 bp)
GGCGGCTGACGATCCAGATGGCGCA
LOC_Os01g69950
Os.4997.1.S1_s_at--341--7591Chr01:40780959..40780983 (25 bp)
GGGAGCACCAAGAACGGGAGGGACT
LOC_Os01g69950
Os.4997.1.S1_s_at--119--7091Chr01:40781004..40781028 (25 bp)
GTCAAGATTTACGGCGACCAGGTCG
LOC_Os01g69950
Os.4997.1.S1_s_at--470--4191Chr01:40781908..40781932 (25 bp)
CCCTCTTTTCTTTGATCGATGGCCT
LOC_Os01g69950
Os.4997.1.S1_s_at--307--10571Chr01:40781915..40781939 (25 bp)
TTCTTTGATCGATGGCCTCGTAAAG
LOC_Os01g69950
Os.4997.1.S1_s_at--761--1351Chr01:40782113..40782137 (25 bp)
AGAGAGAGTACTTCCGCATGCAGCG
LOC_Os01g69950
Os.4997.1.S1_s_at--1057--3631Chr01:40782123..40782147 (25 bp)
CTTCCGCATGCAGCGTGAACGCAAA
LOC_Os01g69950
Os.4997.1.S1_s_at--645--31Chr01:40782180..40782204 (25 bp)
ATTGGTGTTGGCAGCTGCAGATGAA
LOC_Os01g69950
Os.4997.1.S1_s_at--497--8891Chr01:40782210..40782234 (25 bp)
TGAGGTCAATGCAGACTGCTGATAA
LOC_Os01g69950
Os.4997.1.S1_s_at--896--8891Chr01:40782309..40782333 (25 bp)
TGAGATGAATACAAGGCCCATCTTC
LOC_Os01g69950
Target Sequence 
GGTGCGGCGGCTGACGATCCAGATGGCGCACAAGAAGGGGGCCGGGAGCACCAAGAACGGGAGGGACTCCCCCGGGCAGC
GCCTCGGTGTCAAGATTTACGGCGACCAGGTCGCCAAGCCCGGCGCCATCATCATCCGCCAGCGCGGCACCAGGGTCTAT
CCTGGAAATAATGTTGGAATGGGCAAGGATCACACCCTCTTTTCTTTGATCGATGGCCTCGTAAAGTTCGAGAAATATGG
ACCAGACAAGAAAAAGGTAAGTGTTTACCCATACGAGAAACAACCTGAGAACCCAAACAGTTACAGAGCAAGAAAGAGAG
AGTACTTCCGCATGCAGCGTGAACGCAAAAAGGCAAGAGCAGAGGGAATTGTTGAGGTGCAATTGGTGTTGGCAGCTGCA
GATGAAAGTCCTGAGGTCAATGCAGACTGCTGATAAGTTNTCTGCCCCGTTTTTCTCCATTTTCGCAATCCATGTTTGAT
AACAATGTTTGGAATGTAAATCATCAACTATGAGATGAATACAAGGCCCATCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4997.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis