Browse Element(s) Details


Os.50007.1.S1_at

Description gb:AK119604.1
DB_XREF= gi:37989227
TID=Os.50007.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50007 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-101-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-117-E11, full insert sequence.
FL= gb:AK119604.1 gb:AK121463.1 gb:AK062312.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3847011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38440NANA5+22460774..22461124hypothetical protein
LOC_Os05g38450NANA5+22461649..22463858transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g38460Os.54784.1.S1_at11/115+22470121..22477882Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g38470Os.50007.1.S1_at11/115+22484929..22487785expressed protein
LOC_Os05g38470Os.50007.1.S2_at11/115+22484929..22487785expressed protein
LOC_Os05g38480Os.20329.1.S1_at11/115+22490960..22494506Kinesin motor domain containing protein, expressed
LOC_Os05g38490NANA5+22497152..22503258Growth regulator protein, putative
LOC_Os05g38500OsAffx.27225.1.S1_s_at11/115+22504078..22505833Fasciclin domain containing protein
LOC_Os05g38500OsAffx.27225.1.S1_at11/115+22504078..22505833Fasciclin domain containing protein
LOC_Os05g38510OsAffx.27226.1.S1_at11/115+22510059..22512985hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50007.1.S1_at--826--1691Chr05:22486511..22486535 (25 bp)
ACCTCAGGAGGATACTCGAGTCCGT
LOC_Os05g38470
Os.50007.1.S1_at--579--2911Chr05:22486546..22486570 (25 bp)
AAGGATTTCTTGGATCACACCGCCA
LOC_Os05g38470
Os.50007.1.S1_at--54--7711Chr05:22486613..22486637 (25 bp)
GGGTCGCAGTGGCTCACTGATCCAA
LOC_Os05g38470
Os.50007.1.S1_at--452--511Chr05:22486656..22486680 (25 bp)
ATCGTTTCATCGGTGCAGGTACTCC
LOC_Os05g38470
Os.50007.1.S1_at--624--3811Chr05:22486680..22486704 (25 bp)
CTCCTGGCTTGCAATCTGCAGAGGA
LOC_Os05g38470
Os.50007.1.S1_at--63--9491Chr05:22486694..22486718 (25 bp)
TCTGCAGAGGAGTCTAATTCTTTTT
LOC_Os05g38470
Os.50007.1.S1_at--796--7871Chr05:22486732..22486756 (25 bp)
GGTTTATTCCAGTGTCGATGTTCCA
LOC_Os05g38470
Os.50007.1.S1_at--769--10671Chr05:22486752..22486776 (25 bp)
TTCCACTTCCTCTGCTGGAAGGGAG
LOC_Os05g38470
Os.50007.1.S1_at--437--10491Chr05:22486826..22486850 (25 bp)
TTCAAAGGCATTTCTTCCCCAAGGA
LOC_Os05g38470
Os.50007.1.S1_at--28--7971Chr05:22486848..22486872 (25 bp)
GGATCATACACCTTGGTATACTGTT
LOC_Os05g38470
Os.50007.1.S1_at--268--371Chr05:22486895..22486919 (25 bp)
ATCAATGAGAACCATCTGTACCATG
LOC_Os05g38470
Target Sequence 
ACCTCAGGAGGATACTCGAGTCCGTGGTGGAGCTCAAGGATTTCTTGGATCACACCGCCATGCTCGCCATGCCCAGCCAG
AAGAGCATCACCTTGCAGTCCCGGGTCGCAGTGGCTCACTGATCCAACTCTCCCAAGTGCTCTNGATCGTTTCATCGGTG
CAGGTACTCCTCCTGGCTTGCAATCTGCAGAGGAGTCTAATTCTTTTTTTGCGGTTCAATTGGTTTATTCCAGTGTCGAT
GTTCCACTTCCTCTGCTGGAAGGGAGTTGTATAGATCTACTGAGCAAAATCTTTCGAAGATGATAGGTTTTTTGTTTCAA
AGGCATTTCTTCCCCAAGGATCATACACCTTGGTATACTGTTTATCCATGAAACAAAATAATCCATCAATGAGAACCATC
TGTACCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50007.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis