Browse Element(s) Details


Os.54784.1.S1_at

Description gb:AK106756.1
DB_XREF= gi:32991965
TID=Os.54784.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54784 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-115-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-D07, full insert sequence.
FL= gb:AK106756.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3846011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38410NANA5+22443546..22445494laccase LAC5-6, putative, expressed
LOC_Os05g38420Os.51049.1.S1_at11/115+22450351..22452902laccase LAC5-6, putative, expressed
LOC_Os05g38430Os.26886.1.S1_x_at6/115+22455701..22459054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g38430Os.26886.3.S1_x_at4/115+22455701..22459054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g38440NANA5+22460774..22461124hypothetical protein
LOC_Os05g38450NANA5+22461649..22463858transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g38460Os.54784.1.S1_at11/115+22470121..22477882Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g38470Os.50007.1.S1_at11/115+22484929..22487785expressed protein
LOC_Os05g38470Os.50007.1.S2_at11/115+22484929..22487785expressed protein
LOC_Os05g38480Os.20329.1.S1_at11/115+22490960..22494506Kinesin motor domain containing protein, expressed
LOC_Os05g38490NANA5+22497152..22503258Growth regulator protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54784.1.S1_at--18--9911Chr05:22470933..22470957 (25 bp)
TACTACAATGAAATCTGCCTGCGGG
LOC_Os05g38460
Os.54784.1.S1_at--717--471Chr05:22470921..22470945 (25 bp)
ATCTGCCTGCGGGAATTCTGATTGT
LOC_Os05g38460
Os.54784.1.S1_at--151--4351Chr05:22470889..22470913 (25 bp)
CCAGTAGTGGTGTTTCAAGCATTCA
LOC_Os05g38460
Os.54784.1.S1_at--138--2651Chr05:22470822..22470846 (25 bp)
AACCATGAACTTTGCGCATACGACA
LOC_Os05g38460
Os.54784.1.S1_at--781--8531Chr05:22470793..22470817 (25 bp)
TGGATGCTACCCAACCTAATTTGTA
LOC_Os05g38460
Os.54784.1.S1_at--507--8371Chr05:22470498..22470522 (25 bp)
GGCGAGGAGACCTGATGCGTCTAAA
LOC_Os05g38460
Os.54784.1.S1_at--366--9731Chr05:22470471..22470495 (25 bp)
TAATGTTGTCACTCTTCCTAAAGGC
LOC_Os05g38460
Os.54784.1.S1_at--453--931Chr05:22470393..22470417 (25 bp)
AGGAGAGTCACCATTTACCAACCCT
LOC_Os05g38460
Os.54784.1.S1_at--518--451Chr05:22470365..22470389 (25 bp)
ATCTCTCCTTGGTGGGCTGTACAAA
LOC_Os05g38460
Os.54784.1.S1_at--918--2931Chr05:22470274..22470298 (25 bp)
AAGGCTCACAACTCACATCTGTGTA
LOC_Os05g38460
Os.54784.1.S1_at--416--411Chr05:22470144..22470168 (25 bp)
ATCATCGTGGACTCTTATGAGCCTT
LOC_Os05g38460
Target Sequence 
TACTACAATGAAATCTGCCTGCGGGAATTCTGATTGTGCTAATGCCAGTAGTGGTGTTTCAAGCATTCAAGGGAAGAAAC
TGGATGAGCATATGATTGGATTGGAAACTTTAACCATGAACTTTGCGCATACGACAAAGTTGGATGCTACCCAACCTAAT
TTGTAGCATTCAGAAACAGCTAGCGATGTGCTGAAGTGGGCGAGGAGACCTGATGCGTCTAAATTTAATGTTGTCACTCT
TCCTAAAGGCAAATAGGAAACACATTTTCTTTTTTTTGCAGTTCGTTTGAATTACCAAGGTACAGGAGAGTCACCATTTA
CCAACCCTACCATCTCTCCTTGGTGGGCTGTACAAAGCCATCTCCATTTTCGACAGAAAATATGTTGCTACTGTAAGCTC
ACAGTTAGCAATTCAATTTTTAAAGGCTCACAACTCACATCTGTGTAGAAAGAACAATCAGTTATAGAAACTTATCAAAG
TTTTTCCTTTTTTTGAACTGCAGAAACATTTAAAAAGTTTATCAAGATTCCACATACTTTTTTTTCCTTTATATCATCGT
GGACTCTTATGAGCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54784.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis