Browse Element(s) Details


Os.51049.1.S1_at

Description gb:AK068047.1
DB_XREF= gi:32978065
TID=Os.51049.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.51049 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013135B16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013135B16, full insert sequence.
FL= gb:AK068047.1 gb:AK060362.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3842011/11laccase LAC5-6, putative, expressed
LOC_Os02g542801/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38400Os.7204.1.S1_at11/115+22435132..22440963AFG3-like protein 2, putative, expressed
LOC_Os05g38410NANA5+22443546..22445494laccase LAC5-6, putative, expressed
LOC_Os05g38420Os.51049.1.S1_at11/115+22450351..22452902laccase LAC5-6, putative, expressed
LOC_Os05g38430Os.26886.1.S1_x_at6/115+22455701..22459054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g38430Os.26886.3.S1_x_at4/115+22455701..22459054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g38440NANA5+22460774..22461124hypothetical protein
LOC_Os05g38450NANA5+22461649..22463858transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g38460Os.54784.1.S1_at11/115+22470121..22477882Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51049.1.S1_at--211--8012Chr05:22452472..22452496 (25 bp)
GGATGGCAGCCGTCCTGACCAGAAG
LOC_Os05g38420
Os.51049.1.S1_at--711--10731Chr05:22452570..22452594 (25 bp)
TTGCATTTGCATCGCTTCACACAGA
LOC_Os05g38420
Os.51049.1.S1_at--832--4151Chr05:22452596..22452620 (25 bp)
CCCACTTACTGTTGTCCGATCAGAT
LOC_Os05g38420
Os.51049.1.S1_at--740--232Chr05:22452623..22452647 (25 bp)
ATATTTTGCTGCTTCGGTTTCTCAT
LOC_Os05g38420
Os.51049.1.S1_at--326--531Chr05:22452653..22452677 (25 bp)
ATCGACATGCGTGCTTCATTTGTTG
LOC_Os05g38420
Os.51049.1.S1_at--458--2131Chr05:22452712..22452736 (25 bp)
ACAGTGTGTTTGTCAGCTAGCTCCG
LOC_Os05g38420
Os.51049.1.S1_at--907--3391Chr05:22452725..22452749 (25 bp)
CAGCTAGCTCCGGTATTTGCATGAA
LOC_Os05g38420
Os.51049.1.S1_at--667--6531Chr05:22452782..22452806 (25 bp)
GATTTCTTTGATTGGCAGGGCTTGA
LOC_Os05g38420
Os.51049.1.S1_at--721--1072Chr05:22452798..22452822 (25 bp)
AGGGCTTGACTCTTAGGACTGCTTA
LOC_Os05g38420
Os.51049.1.S1_at--796--10471Chr05:22452820..22452844 (25 bp)
TTACTGTAACTCAAAGCGATCGCTT
LOC_Os05g38420
Os.51049.1.S1_at--107--6391Chr05:22452837..22452861 (25 bp)
GATCGCTTGCTTTGCATCTTGTAAT
LOC_Os05g38420
Target Sequence 
GGATGGCAGCCGTCCTGACCAGAAGCTCCCGCCTCCACCGTTGGATCTCCCAAAATGCTAGGAATAAAACTCAAGATCAT
ATCAATAGTCAAGATTGGTTGCATTTGCATCGCTTCACACAGACCCCACTTACTGTTGTCCGATCAGATATATATTTTGC
TGCTTCGGTTTCTCATCGTCGATCGACATGCGTGCTTCATTTGTTGCTTTTTTTGATAAACTGATTTTCTCATGCAATTG
ACAGTGTGTTTGTCAGCTAGCTCCGGTATTTGCATGAAGTTTCAATTTCTTTCGTATTTTGAGGAAATTTGATTTCTTTG
ATTGGCAGGGCTTGACTCTTAGGACTGCTTACTGTAACTCAAAGCGATCGCTTGCTTTGCATCTTGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51049.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis