Browse Element(s) Details


Os.7204.1.S1_at

Description gb:AK069936.1
DB_XREF= gi:32979960
TID=Os.7204.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7204 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023039G20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023039G20, full insert sequence.
FL= gb:AK069936.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3840011/11AFG3-like protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38370Os.11124.1.S1_at9/115+22409288..22411806FK506-binding protein 4, putative, expressed
LOC_Os05g38380NANA5+22413448..22413702hypothetical protein
LOC_Os05g38390OsAffx.27223.1.S1_at11/115+22418169..22419975laccase, putative
LOC_Os05g38400Os.7204.1.S1_at11/115+22435132..22440963AFG3-like protein 2, putative, expressed
LOC_Os05g38410NANA5+22443546..22445494laccase LAC5-6, putative, expressed
LOC_Os05g38420Os.51049.1.S1_at11/115+22450351..22452902laccase LAC5-6, putative, expressed
LOC_Os05g38430Os.26886.1.S1_x_at6/115+22455701..22459054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g38430Os.26886.3.S1_x_at4/115+22455701..22459054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g38440NANA5+22460774..22461124hypothetical protein
LOC_Os05g38450NANA5+22461649..22463858transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0010027biological_processthylakoid membrane organization and biogenesis
GO:0010205biological_processphotoinhibition
GO:0010206biological_processphotosystem II repair
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0004176molecular_functionATP-dependent peptidase activity
GO:0008237molecular_functionmetallopeptidase activity
GO:0008270molecular_functionzinc ion binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7204.1.S1_at--503--9311Chr05:22440369..22440393 (25 bp)
TCCCTCAGAGGGACGATGGCTTTGA
LOC_Os05g38400
Os.7204.1.S1_at--160--2451Chr05:22440515..22440539 (25 bp)
AAAATCGCTGAAATGCTGCTTGAGA
LOC_Os05g38400
Os.7204.1.S1_at--403--5971Chr05:22440579..22440603 (25 bp)
GAGAACGGCCTTTCAAGGCATCCGA
LOC_Os05g38400
Os.7204.1.S1_at--319--5831Chr05:22440617..22440641 (25 bp)
GACCTCTTCAAGCAAGGGTTCCAGG
LOC_Os05g38400
Os.7204.1.S1_at--625--1671Chr05:22440684..22440708 (25 bp)
AGCCTGATGATGACGGAACACCCTC
LOC_Os05g38400
Os.7204.1.S1_at--925--4851Chr05:22440709..22440733 (25 bp)
GCTTGGCGAGGTTGTACCCACGTAA
LOC_Os05g38400
Os.7204.1.S1_at--832--1811Chr05:22440724..22440748 (25 bp)
ACCCACGTAATCCTGCAGCAAATTT
LOC_Os05g38400
Os.7204.1.S1_at--990--4711Chr05:22440752..22440776 (25 bp)
GCTGTAAATTGCACTCCTATTCGAT
LOC_Os05g38400
Os.7204.1.S1_at--532--4291Chr05:22440826..22440850 (25 bp)
CCTCGCCTAATCTCTGATGTGGGAA
LOC_Os05g38400
Os.7204.1.S1_at--442--791Chr05:22440842..22440866 (25 bp)
ATGTGGGAACCCAGTTGGCTTTTCG
LOC_Os05g38400
Os.7204.1.S1_at--922--4431Chr05:22440870..22440894 (25 bp)
GCCATAGTGTTTCCCTGTTTTAAAT
LOC_Os05g38400
Target Sequence 
TCCCTCAGAGGGACGATGGCTTTGAAATGACCAAACCTTACAGCAACCAAACAGCATCCATCATCGACGATGAGGTGAGG
GAATGGGTTGGCAAGGCGTACAAAAAAACAGTGGAACTGATAACTGAGCACAAGGAGCAAGTCGCCAAAATCGCTGAAAT
GCTGCTTGAGAANGAGGTCCTCCACCAGGACGATTTGGTTAGGGTATTAGGAGAACGGCCTTTCAAGGCATCCGAGCCAA
CTAACTACGACCTCTTCAAGCAAGGGTTCCAGGATGAAGAAGACAGCAAGAACCAAGAGGCGGCCAAAACCCCTCAGCCT
GATGATGACGGAACACCCTCGCTTGGCGAGGTTGTACCCACGTAATCCTGCAGCAAATTTACAGCTGTAAATTGCACTCC
TATTCGATAGATTCTTGTTTGTTGTTGCAGCATAAGAAAATTTGTATAAANTTAACGCCCTCGCCTAATCTCTGATGTGG
GAACCCAGTTGGCTTTTCGCCGGCCATAGTGTTTCCCTGTTTTAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7204.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis