Browse Element(s) Details


Os.11124.1.S1_at

Description gb:AK101652.1
DB_XREF= gi:32986861
TID=Os.11124.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11124 (NCBI UniGene Cluster)
UG_TITLE=(indica cultivar-group) mRNA for peptidylprolyl cis-trans isomerase (ppiase gene)
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033057B20, full insert sequence.
FL= gb:AK061127.1 gb:AK101652.1 gb:AK059467.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g383709/11FK506-binding protein 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38330Os.5627.1.S1_at11/115+22384763..22388887expressed protein
LOC_Os05g38340NANA5+22390719..22391794retrotransposon protein, putative, LINE subclass
LOC_Os05g38350OsAffx.27222.1.S1_x_at11/115+22398553..22401036Acyltransferase family protein, expressed
LOC_Os05g38350OsAffx.27222.1.S1_at11/115+22398553..22401036Acyltransferase family protein, expressed
LOC_Os05g38350Os.33373.1.S2_x_at1/115+22398553..22401036Acyltransferase family protein, expressed
LOC_Os05g38360Os.25051.1.S1_at11/115+22405348..22408995DHHC zinc finger domain containing protein, expressed
LOC_Os05g38360Os.25051.2.S1_x_at10/115+22405348..22408995DHHC zinc finger domain containing protein, expressed
LOC_Os05g38360OsAffx.4553.1.S1_at10/115+22405348..22408995DHHC zinc finger domain containing protein, expressed
LOC_Os05g38370Os.11124.1.S1_at9/115+22409288..22411806FK506-binding protein 4, putative, expressed
LOC_Os05g38380NANA5+22413448..22413702hypothetical protein
LOC_Os05g38390OsAffx.27223.1.S1_at11/115+22418169..22419975laccase, putative
LOC_Os05g38400Os.7204.1.S1_at11/115+22435132..22440963AFG3-like protein 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005516molecular_functioncalmodulin binding
GO:0005528molecular_functionFK506 binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11124.1.S1_at--706--1331Chr05:22410031..22410131 (25 bp)
AGAGATTCCACCCAATGCAACACTC
LOC_Os05g38370
Os.11124.1.S1_at--418--3251Chr05:22409963..22409987 (25 bp)
CAAGCCTGGGCAGTGTTTCTGATGA
LOC_Os05g38370
Os.11124.1.S1_at--997--7431Chr05:22409543..22409567 (25 bp)
GTGTCCAAGCCAAACTTGACGCGAA
LOC_Os05g38370
Os.11124.1.S1_at--433--211Chr05:22409478..22409502 (25 bp)
ATTTGCTTCTGACTACTGTAACCTA
LOC_Os05g38370
Os.11124.1.S1_at--441--71Chr05:22409421..22409445 (25 bp)
ATTGCTTGTTGGCTACTGTTCATCA
LOC_Os05g38370
Os.11124.1.S1_at--174--411Chr05:22409400..22409424 (25 bp)
ATCAGATGCTGCGTTGTTGCTCCTG
LOC_Os05g38370
Os.11124.1.S1_at--777--6671Chr05:22409385..22409409 (25 bp)
GTTGCTCCTGTTTGACACCATGGCT
LOC_Os05g38370
Os.11124.1.S1_at--84--5651Chr05:22409372..22409396 (25 bp)
GACACCATGGCTGTACTGATAGAAC
LOC_Os05g38370
Os.11124.1.S1_at--555--371Chr05:22409319..22409343 (25 bp)
ATCACATGCAATCATTGACCGGTTA
LOC_Os05g38370
Os.11124.1.S1_at--942--10151Chr05:22409272..22409296 (25 bp)
TATCTGATGATATACCGCGTCTCTG
NONE
Os.11124.1.S1_at--730--6511Chr05:22409264..22409288 (25 bp)
GATATACCGCGTCTCTGTAAGTTAA
NONE
Target Sequence 
AGAGATTCCACCCAATGCAACACTCATTTTTGAGGTGGAGTTAGTGGCTTGTAGGCCTAGGAAAGGTTCAAGCCTGGGCA
GTGTTTCTGATGAGAAAGCCAGGCTAGAGGAACTAAAGAAGCAGCGAGAGCTAGCTGCTGCCACCAAGGAGGAAGAGAAA
AAGAAGAGGGAAGAAGCGAAGGCTGCTGCAGCAGCTCGTGTCCAAGCCAAACTTGACGCGAAGAAGGGGAAGGGAAAAGG
AAAGGGAAAATAGATGACTAGTATTTGCTTCTGACTACTGTAACCTAGAAATAATCCGCAACAAATCATCATCTGCAAGA
TTGCTTGTTGGCTACTGTTCATCAGATGCTGCGTTGTTGCTCCTGTTTGACACCATGGCTGTACTGATAGAACAAAATTG
TAGTTAACGTTTTCACAAATCATCACATGCAATCATTGACCGGTTATTGGTTAATGATTGCATCTTCATATCTGATGATA
TACCGCGTCTCTGTAAGTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11124.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis