Browse Element(s) Details


Os.5627.1.S1_at

Description gb:AK106240.1
DB_XREF= gi:32991449
TID=Os.5627.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5627 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-100-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-C10, full insert sequence.
FL= gb:AK106240.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3833011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38270Os.7366.1.S1_at11/115+22357378..22362146Regulator of chromosome condensation, putative, expressed
LOC_Os05g38280Os.57128.1.S1_at11/115+22364965..22366981expressed protein
LOC_Os05g38280Os.57128.1.S1_x_at11/115+22364965..22366981expressed protein
LOC_Os05g38290OsAffx.27219.1.S1_at11/115+22367506..22369217Protein phosphatase 2C, putative, expressed
LOC_Os05g38290OsAffx.19050.1.S1_at1/115+22367506..22369217Protein phosphatase 2C, putative, expressed
LOC_Os05g38300OsAffx.15008.1.S1_at11/115+22370214..22370564hypothetical protein
LOC_Os05g38310OsAffx.27220.1.S1_at11/115+22372384..22374158Ubiquitin, putative
LOC_Os05g38320NANA5+22381371..22382861expressed protein
LOC_Os05g38330Os.5627.1.S1_at11/115+22384763..22388887expressed protein
LOC_Os05g38340NANA5+22390719..22391794retrotransposon protein, putative, LINE subclass
LOC_Os05g38350OsAffx.27222.1.S1_x_at11/115+22398553..22401036Acyltransferase family protein, expressed
LOC_Os05g38350OsAffx.27222.1.S1_at11/115+22398553..22401036Acyltransferase family protein, expressed
LOC_Os05g38350Os.33373.1.S2_x_at1/115+22398553..22401036Acyltransferase family protein, expressed
LOC_Os05g38360Os.25051.1.S1_at11/115+22405348..22408995DHHC zinc finger domain containing protein, expressed
LOC_Os05g38360Os.25051.2.S1_x_at10/115+22405348..22408995DHHC zinc finger domain containing protein, expressed
LOC_Os05g38360OsAffx.4553.1.S1_at10/115+22405348..22408995DHHC zinc finger domain containing protein, expressed
LOC_Os05g38370Os.11124.1.S1_at9/115+22409288..22411806FK506-binding protein 4, putative, expressed
LOC_Os05g38380NANA5+22413448..22413702hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5627.1.S1_at--109--9651Chr05:22385135..22385159 (25 bp)
TCAGTCAAATAGAAGAGCCGAAGGT
LOC_Os05g38330
Os.5627.1.S1_at--89--3971Chr05:22385005..22385029 (25 bp)
CGGATCGGCAGGGTCATGTAGCCTC
LOC_Os05g38330
Os.5627.1.S1_at--608--8271Chr05:22384999..22385023 (25 bp)
GGCAGGGTCATGTAGCCTCCACAAT
LOC_Os05g38330
Os.5627.1.S1_at--830--4111Chr05:22384970..22384994 (25 bp)
CGAATGGTACTATGCAATAATCTGC
LOC_Os05g38330
Os.5627.1.S1_at--372--3091Chr05:22384955..22384979 (25 bp)
AATAATCTGCGGTTGTAAGCCTGTA
LOC_Os05g38330
Os.5627.1.S1_at--1112--7051Chr05:22384941..22384965 (25 bp)
GTAAGCCTGTAAATGCACCAATATA
LOC_Os05g38330
Os.5627.1.S1_at--382--9231Chr05:22384904..22384928 (25 bp)
TCCTTCAGAATTTTGCGCCTAACTG
LOC_Os05g38330
Os.5627.1.S1_at--392--5211Chr05:22384897..22384921 (25 bp)
GAATTTTGCGCCTAACTGTTTTTAG
LOC_Os05g38330
Os.5627.1.S1_at--19--2731Chr05:22384872..22384896 (25 bp)
AAGAATTTAACATGCACGGACCCTA
LOC_Os05g38330
Os.5627.1.S1_at--328--9031Chr05:22384860..22384884 (25 bp)
TGCACGGACCCTAATTGCATAAATG
LOC_Os05g38330
Os.5627.1.S1_at--378--8732Chr04:27133916..27133943 (25 bp)
TGTACAACAGTGCTTAACGGACTTT
NONE
Target Sequence 
TCAGTCAAATAGAAGAGCCGAAGGTGAACGGATGAAAGAATGGGCAGAACATGCTTGGAGGAATAGTAGATTAACATTAG
CTGAAGCCTTGGAATTTTNAGGACCTTCAAAACCAACAGTNGTTGATACCCGGATCGGCAGGGTCATGTAGCCTCCACAA
TNTAACGAATGGTACTATGCAATAATCTGCGGTTGTAAGCCTGTAAATGCACCAATATATATATGAATTTNTCCTTCAGA
ATTTTGCGCCTAACTGTTTTTAGAAGAATTTAACATGCACGGACCCTAATTGCATAAATGAGATTTATTGCTNTAGAGCA
TGTACAACAGTGCTTAACGGACTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5627.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis