Browse Element(s) Details


Os.57128.1.S1_at

Description gb:AK110966.1
DB_XREF= gi:32996175
TID=Os.57128.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57128 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-174-B06, full insert sequence.
FL= gb:AK110966.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3828011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38250Os.14667.1.S1_at11/115+22342178..22344302integral membrane protein, putative, expressed
LOC_Os05g38250Os.14667.1.S1_x_at11/115+22342178..22344302integral membrane protein, putative, expressed
LOC_Os05g38250Os.14667.2.S1_at9/115+22342178..22344302integral membrane protein, putative, expressed
LOC_Os05g38260NANA5+22347220..22351989retrotransposon protein, putative, unclassified
LOC_Os05g38270Os.7366.1.S1_at11/115+22357378..22362146Regulator of chromosome condensation, putative, expressed
LOC_Os05g38280Os.57128.1.S1_at11/115+22364965..22366981expressed protein
LOC_Os05g38280Os.57128.1.S1_x_at11/115+22364965..22366981expressed protein
LOC_Os05g38290OsAffx.27219.1.S1_at11/115+22367506..22369217Protein phosphatase 2C, putative, expressed
LOC_Os05g38290OsAffx.19050.1.S1_at1/115+22367506..22369217Protein phosphatase 2C, putative, expressed
LOC_Os05g38300OsAffx.15008.1.S1_at11/115+22370214..22370564hypothetical protein
LOC_Os05g38310OsAffx.27220.1.S1_at11/115+22372384..22374158Ubiquitin, putative
LOC_Os05g38320NANA5+22381371..22382861expressed protein
LOC_Os05g38330Os.5627.1.S1_at11/115+22384763..22388887expressed protein
LOC_Os05g38340NANA5+22390719..22391794retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57128.1.S1_at--524--5813Chr06:13998597..13998621 (25 bp)
GACCGCCAGACCTCCGGGCGCTGGA
NONE
Os.57128.1.S1_at--768--1271Chr05:22366516..22366540 (25 bp)
AGATCCAGGCGCAGATCTGGCGGTT
LOC_Os05g38280
Os.57128.1.S1_at--987--571Chr05:22366518..22366542 (25 bp)
ATCCAGGCGCAGATCTGGCGGTTTC
LOC_Os05g38280
Os.57128.1.S1_at--256--591Chr05:22366697..22366721 (25 bp)
ATGCCCGAGCGCGAGGACAAAGCCC
LOC_Os05g38280
Os.57128.1.S1_at--977--4591Chr05:22366851..22366875 (25 bp)
GCGACACGAGAGGAAACAGGTCAAT
LOC_Os05g38280
Os.57128.1.S1_at--78--2132Chr05:22366866..22366890 (25 bp)
ACAGGTCAATATTTTGTTCTCGTGT
LOC_Os05g38280
Os.57128.1.S1_at--1018--7071Chr05:22366870..22366894 (25 bp)
GTCAATATTTTGTTCTCGTGTTTTA
LOC_Os05g38280
Os.57128.1.S1_at--240--2331Chr05:22366943..22366967 (25 bp)
AAAGTTTGAAGGCATTGACGTGCAT
LOC_Os05g38280
Os.57128.1.S1_at--964--6851Chr05:22366946..22366970 (25 bp)
GTTTGAAGGCATTGACGTGCATTGA
LOC_Os05g38280
Os.57128.1.S1_at--557--8291Chr05:22366953..22366977 (25 bp)
GGCATTGACGTGCATTGAGATTTCA
LOC_Os05g38280
Os.57128.1.S1_at--80--10771Chr05:22366957..22366981 (25 bp)
TTGACGTGCATTGAGATTTCACTCC
LOC_Os05g38280
Target Sequence 
GACCGCCAGACCTCCGGGCGCTGGATCCGCCGTCGGCGCGGCCAGGTTCACCTCACCGACGCCATCCCCTTGCCGCCCTC
GCCGTCGTCGCCATCCCCGCCACCAGACGCCGCCGCCGGTCGCCGTCCCGCCAGATCCAGGCGCAGATCTGGCGGTTTCC
TCCGCCGCCGCCGCCAACGCCTCGACGCCGCTGCCACCACCACCAGACACCGCCGCCGCACCGCTCAACCCCGCCGCCGG
CTGCTCCACCGCCAGATCCGGCCGGCGGCACGGATCTGGCCAGTTCCGCCGCCCTCGAGCAGGTCCCCCTCCCATGCCCG
AGCGCGAGGACAAAGCCCCGCCGCCGCCGTCCTTGTGGCCGCGCAGCTTTGCCGGCAGCCGCTCGAGCGGTGGCGAGGCA
GAGGAGGAGGAAAGGGGAGACGAGCGCCGGTGAGGTCGTCGCCTCCCGGTCGCCCGTGGGGGGAGGGGCGACACGAGAGG
AAACAGGTCAATATTTTGTTCTCGTGTTTTAGTTGGAAGTTTATTTGTGTATGAAAGTTTTGATGTGATGAAAAAGTTGA
AAGTTTGAAGGCATTGACGTGCATTGAGATTTCACTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57128.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis