Browse Element(s) Details


OsAffx.27219.1.S1_at

Description tigr:9633.m03549
TID=OsAffx.27219.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein phosphatase 2C, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3829011/11Protein phosphatase 2C, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38250Os.14667.1.S1_at11/115+22342178..22344302integral membrane protein, putative, expressed
LOC_Os05g38250Os.14667.1.S1_x_at11/115+22342178..22344302integral membrane protein, putative, expressed
LOC_Os05g38250Os.14667.2.S1_at9/115+22342178..22344302integral membrane protein, putative, expressed
LOC_Os05g38260NANA5+22347220..22351989retrotransposon protein, putative, unclassified
LOC_Os05g38270Os.7366.1.S1_at11/115+22357378..22362146Regulator of chromosome condensation, putative, expressed
LOC_Os05g38280Os.57128.1.S1_at11/115+22364965..22366981expressed protein
LOC_Os05g38280Os.57128.1.S1_x_at11/115+22364965..22366981expressed protein
LOC_Os05g38290OsAffx.27219.1.S1_at11/115+22367506..22369217Protein phosphatase 2C, putative, expressed
LOC_Os05g38290OsAffx.19050.1.S1_at1/115+22367506..22369217Protein phosphatase 2C, putative, expressed
LOC_Os05g38300OsAffx.15008.1.S1_at11/115+22370214..22370564hypothetical protein
LOC_Os05g38310OsAffx.27220.1.S1_at11/115+22372384..22374158Ubiquitin, putative
LOC_Os05g38320NANA5+22381371..22382861expressed protein
LOC_Os05g38330Os.5627.1.S1_at11/115+22384763..22388887expressed protein
LOC_Os05g38340NANA5+22390719..22391794retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27219.1.S1_at--538--1651Chr05:22367716..22367740 (25 bp)
AGCGCCGACAACGTGAGCGTCGTCG
LOC_Os05g38290
OsAffx.27219.1.S1_at--504--3971Chr05:22367673..22367697 (25 bp)
CGGTGCCGTGATCCGCCATTATTAT
LOC_Os05g38290
OsAffx.27219.1.S1_at--1119--7391Chr05:22367666..22367690 (25 bp)
GTGATCCGCCATTATTATTGGCTTA
LOC_Os05g38290
OsAffx.27219.1.S1_at--130--171Chr05:22367653..22367677 (25 bp)
ATTATTGGCTTATTCTCTTCCTCCT
LOC_Os05g38290
OsAffx.27219.1.S1_at--604--10471Chr05:22367619..22367643 (25 bp)
TTCACTTCTTCCCTCCTAATTTACT
LOC_Os05g38290
OsAffx.27219.1.S1_at--304--9751Chr05:22367603..22367627 (25 bp)
TAATTTACTCCTGCGATCATCGTCG
LOC_Os05g38290
OsAffx.27219.1.S1_at--967--6431Chr05:22367589..22367613 (25 bp)
GATCATCGTCGCAAAGAATTTACTT
LOC_Os05g38290
OsAffx.27219.1.S1_at--244--10331Chr05:22367571..22367595 (25 bp)
TTTACTTAGTGAGACCATCATGTCT
LOC_Os05g38290
OsAffx.27219.1.S1_at--146--5851Chr05:22367559..22367583 (25 bp)
GACCATCATGTCTCGTGTGATTGGT
LOC_Os05g38290
OsAffx.27219.1.S1_at--285--9631Chr05:22367554..22367578 (25 bp)
TCATGTCTCGTGTGATTGGTGGATG
LOC_Os05g38290
OsAffx.27219.1.S1_at--167--6611Chr05:22367541..22367565 (25 bp)
GATTGGTGGATGGTCAGAACAAGAA
LOC_Os05g38290
Target Sequence 
AGCGCCGACAACGTGAGCGTCGTCGTCGTGGATCTCCGCCGGCCGGTGCCGTGATCCGCCATTATTATTGGCTTATTCTC
TTCCTCCTCTATTTTTTTTCACTTCTTCCCTCCTAATTTACTCCTGCGATCATCGTCGCAAAGAATTTACTTAGTGAGAC
CATCATGTCTCGTGTGATTGGTGGATGGTCAGAACAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27219.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis