Browse Element(s) Details


OsAffx.15008.1.S1_at

Description tigr:9633.m03550
TID=OsAffx.15008.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3830011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38260NANA5+22347220..22351989retrotransposon protein, putative, unclassified
LOC_Os05g38270Os.7366.1.S1_at11/115+22357378..22362146Regulator of chromosome condensation, putative, expressed
LOC_Os05g38280Os.57128.1.S1_at11/115+22364965..22366981expressed protein
LOC_Os05g38280Os.57128.1.S1_x_at11/115+22364965..22366981expressed protein
LOC_Os05g38290OsAffx.27219.1.S1_at11/115+22367506..22369217Protein phosphatase 2C, putative, expressed
LOC_Os05g38290OsAffx.19050.1.S1_at1/115+22367506..22369217Protein phosphatase 2C, putative, expressed
LOC_Os05g38300OsAffx.15008.1.S1_at11/115+22370214..22370564hypothetical protein
LOC_Os05g38310OsAffx.27220.1.S1_at11/115+22372384..22374158Ubiquitin, putative
LOC_Os05g38320NANA5+22381371..22382861expressed protein
LOC_Os05g38330Os.5627.1.S1_at11/115+22384763..22388887expressed protein
LOC_Os05g38340NANA5+22390719..22391794retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15008.1.S1_at--380--3391Chr05:22370506..22370530 (25 bp)
CAGCGCTCCTACGTGTGGAGGAGCT
LOC_Os05g38300
OsAffx.15008.1.S1_at--188--4111Chr05:22370503..22370527 (25 bp)
CGCTCCTACGTGTGGAGGAGCTTGA
LOC_Os05g38300
OsAffx.15008.1.S1_at--361--911Chr05:22370453..22370477 (25 bp)
AGGCTGTCGCGGCTTGACACCAATC
LOC_Os05g38300
OsAffx.15008.1.S1_at--799--4731Chr05:22370451..22370475 (25 bp)
GCTGTCGCGGCTTGACACCAATCGC
LOC_Os05g38300
OsAffx.15008.1.S1_at--675--2151Chr05:22370437..22370461 (25 bp)
ACACCAATCGCGGCATGCTCGAGGG
LOC_Os05g38300
OsAffx.15008.1.S1_at--339--4011Chr05:22370398..22370422 (25 bp)
CGTCCCGCGGCCACAGAGTAGCTGT
LOC_Os05g38300
OsAffx.15008.1.S1_at--509--8451Chr05:22370390..22370414 (25 bp)
GGCCACAGAGTAGCTGTGCCATCTG
LOC_Os05g38300
OsAffx.15008.1.S1_at--306--3431Chr05:22370385..22370409 (25 bp)
CAGAGTAGCTGTGCCATCTGCACGA
LOC_Os05g38300
OsAffx.15008.1.S1_at--235--6091Chr05:22370383..22370407 (25 bp)
GAGTAGCTGTGCCATCTGCACGAGC
LOC_Os05g38300
OsAffx.15008.1.S1_at--403--6971Chr05:22370381..22370405 (25 bp)
GTAGCTGTGCCATCTGCACGAGCAG
LOC_Os05g38300
OsAffx.15008.1.S1_at--962--1611Chr05:22370379..22370403 (25 bp)
AGCTGTGCCATCTGCACGAGCAGCA
LOC_Os05g38300
Target Sequence 
CAGCGCTCCTACGTGTGGAGGAGCTTGAGAACCTCCTCAGCGACGTGCCGCGGAGGCTGTCGCGGCTTGACACCAATCGC
GGCATGCTCGAGGGGCAGATCGCCGCGGCGTCCCGCGGCCACAGAGTAGCTGTGCCATCTGCACGAGCAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15008.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis