Browse Element(s) Details


Os.25051.1.S1_at

Description gb:AK060188.1
DB_XREF= gi:32970206
TID=Os.25051.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25051 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023002F22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-001-D10, full insert sequence.
FL= gb:AK060188.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3836011/11DHHC zinc finger domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38320NANA5+22381371..22382861expressed protein
LOC_Os05g38330Os.5627.1.S1_at11/115+22384763..22388887expressed protein
LOC_Os05g38340NANA5+22390719..22391794retrotransposon protein, putative, LINE subclass
LOC_Os05g38350OsAffx.27222.1.S1_x_at11/115+22398553..22401036Acyltransferase family protein, expressed
LOC_Os05g38350OsAffx.27222.1.S1_at11/115+22398553..22401036Acyltransferase family protein, expressed
LOC_Os05g38350Os.33373.1.S2_x_at1/115+22398553..22401036Acyltransferase family protein, expressed
LOC_Os05g38360Os.25051.1.S1_at11/115+22405348..22408995DHHC zinc finger domain containing protein, expressed
LOC_Os05g38360Os.25051.2.S1_x_at10/115+22405348..22408995DHHC zinc finger domain containing protein, expressed
LOC_Os05g38360OsAffx.4553.1.S1_at10/115+22405348..22408995DHHC zinc finger domain containing protein, expressed
LOC_Os05g38370Os.11124.1.S1_at9/115+22409288..22411806FK506-binding protein 4, putative, expressed
LOC_Os05g38380NANA5+22413448..22413702hypothetical protein
LOC_Os05g38390OsAffx.27223.1.S1_at11/115+22418169..22419975laccase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25051.1.S1_at--597--3571Chr05:22408421..22408445 (25 bp)
CATTAGGTAGTTGCTAATCTGAACA
LOC_Os05g38360
Os.25051.1.S1_at--1041--3051Chr05:22408436..22408460 (25 bp)
AATCTGAACATAGACCTCTGGCTTC
LOC_Os05g38360
Os.25051.1.S1_at--829--8971Chr05:22408440..22408464 (25 bp)
TGAACATAGACCTCTGGCTTCCTAT
LOC_Os05g38360
Os.25051.1.S1_at--186--1391Chr05:22408447..22408471 (25 bp)
AGACCTCTGGCTTCCTATTAGATTG
LOC_Os05g38360
Os.25051.1.S1_at--844--8291Chr05:22408455..22408479 (25 bp)
GGCTTCCTATTAGATTGCCCATATG
LOC_Os05g38360
Os.25051.1.S1_at--409--151Chr05:22408463..22408487 (25 bp)
ATTAGATTGCCCATATGTGCCTCTT
LOC_Os05g38360
Os.25051.1.S1_at--1150--6571Chr05:22408467..22408491 (25 bp)
GATTGCCCATATGTGCCTCTTTTTT
LOC_Os05g38360
Os.25051.1.S1_at--641--5391Chr05:22408500..22408524 (25 bp)
GAAGCATTGTGTTTTGGAGCAGTAC
LOC_Os05g38360
Os.25051.1.S1_at--761--8071Chr05:22408515..22408539 (25 bp)
GGAGCAGTACAGATAATCTGTCAAG
LOC_Os05g38360
Os.25051.1.S1_at--889--171Chr05:22408897..22408921 (25 bp)
ATTTATTTGTCATACATCGACGCAG
LOC_Os05g38360
Os.25051.1.S1_at--549--331Chr05:22408908..22408932 (25 bp)
ATACATCGACGCAGTTTCTTTGTGT
LOC_Os05g38360
Target Sequence 
CATTAGGTAGTTGCTAATCTGAACATAGACCTCTGGCTTCCTATTAGATTGCCCATATGTGCCTCTTTTTTTTTTACTGA
AGCATTGTGTTTTGGAGCAGTACAGATAATCTGTCAAGGTCTTGAAGCTCCTTTATGAAATGTGCTATAAGTGTAACGTA
CAGGACCTCCCCGCGGCTCCAAGTTAGGACATGGGCTAGGCTGCTCCTTTGTTTTCGTGGTGGTTATTTTACATACTTGA
TGAGGCAGAACATGCTGCCTCGCCTGTAATTTAGTGTAGTCTCTGATTGCGTTTATTAGGAGATTTGAATGTAGTCAATT
CTGTTGTAGATCTCCCCGGCAGGAAAAAATGGGGGGCTGCTGTAAATCCAACATCCATACTTTGTTCTCTTAAAGAGCCA
CTTATGGCAGCGAAAGGCCACGATAGGAATCATCTGAGATTGTTCGCATACATGTTTATTAAGAACAGAACTTATATTTA
TTTGTCATACATCGACGCAGTTTCTTTGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25051.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis