Browse Element(s) Details


OsAffx.4553.1.S1_at

Description tigr:9633.m03557
TID=OsAffx.4553.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3836010/11DHHC zinc finger domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38320NANA5+22381371..22382861expressed protein
LOC_Os05g38330Os.5627.1.S1_at11/115+22384763..22388887expressed protein
LOC_Os05g38340NANA5+22390719..22391794retrotransposon protein, putative, LINE subclass
LOC_Os05g38350OsAffx.27222.1.S1_x_at11/115+22398553..22401036Acyltransferase family protein, expressed
LOC_Os05g38350OsAffx.27222.1.S1_at11/115+22398553..22401036Acyltransferase family protein, expressed
LOC_Os05g38350Os.33373.1.S2_x_at1/115+22398553..22401036Acyltransferase family protein, expressed
LOC_Os05g38360Os.25051.1.S1_at11/115+22405348..22408995DHHC zinc finger domain containing protein, expressed
LOC_Os05g38360Os.25051.2.S1_x_at10/115+22405348..22408995DHHC zinc finger domain containing protein, expressed
LOC_Os05g38360OsAffx.4553.1.S1_at10/115+22405348..22408995DHHC zinc finger domain containing protein, expressed
LOC_Os05g38370Os.11124.1.S1_at9/115+22409288..22411806FK506-binding protein 4, putative, expressed
LOC_Os05g38380NANA5+22413448..22413702hypothetical protein
LOC_Os05g38390OsAffx.27223.1.S1_at11/115+22418169..22419975laccase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4553.1.S1_at--844--6451NONE
GATCAAGCGCAAGATTCTTATCATA
NONE
OsAffx.4553.1.S1_at--771--5951Chr05:22407871..22407937 (25 bp)
GAGAATCTTATTTCAAGCATAAACA
LOC_Os05g38360
OsAffx.4553.1.S1_at--798--4951Chr05:22407929..22407953 (25 bp)
GCATAAACATTCTACATATCCTAAT
LOC_Os05g38360
OsAffx.4553.1.S1_at--913--8151Chr05:22407967..22407991 (25 bp)
GGAACAACCGAATACTTGACTTTTG
LOC_Os05g38360
OsAffx.4553.1.S1_at--1052--4211Chr05:22407974..22407998 (25 bp)
CCGAATACTTGACTTTTGAGAAACA
LOC_Os05g38360
OsAffx.4553.1.S1_at--766--3191Chr05:22407997..22408021 (25 bp)
CAATGTCGAAGATTGTCCCCTTTTC
LOC_Os05g38360
OsAffx.4553.1.S1_at--1017--10811Chr05:22408009..22408033 (25 bp)
TTGTCCCCTTTTCCTCTGTATAAGA
LOC_Os05g38360
OsAffx.4553.1.S1_at--940--9291Chr05:22408012..22408036 (25 bp)
TCCCCTTTTCCTCTGTATAAGACAT
LOC_Os05g38360
OsAffx.4553.1.S1_at--887--6891Chr05:22408026..22408050 (25 bp)
GTATAAGACATCAAAGCTTTTGCCA
LOC_Os05g38360
OsAffx.4553.1.S1_at--309--2691Chr05:22408039..22408063 (25 bp)
AAGCTTTTGCCACTACCCATTCATC
LOC_Os05g38360
OsAffx.4553.1.S1_at--1015--9951Chr05:22408052..22408076 (25 bp)
TACCCATTCATCCAGTAGAAACAGA
LOC_Os05g38360
Target Sequence 
GATCAAGCGCAAGATTCTTATCATAGGGAGCGCCATGTACAGTGTTCCTGTAGATGAACATTCAAGCAATGATTCTTCTA
GGACATCGATTATCATTTGTGGGATCATTCTATGCCCGCTGACTTTGGCTTTGACAGTGCTCTTTGGTTGGCATATCTAC
CTCATATTACAGAATAAAACTACAATTGAGTATCATGAAGGTGTGAGAGCAATGTGGTTAGCAGAAAAGGGTGGAAATCT
TTATCATCATCCGTATCATCTTGGTGTCTACGAGAATCTTATTTCAAGCATAAACATTCTACATATCCTAATAGAAGGCA
ATAAGGGAACAACCGAATACTTGACTTTTGAGAAACAATGTCGAAGATTGTCCCCTTTTCCTCTGTATAAGACATCAAAG
CTTTTGCCACTACCCATTCATCCAGTAGAAACAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4553.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis