Browse Element(s) Details


OsAffx.27222.1.S1_at

Description tigr:9633.m03556
TID=OsAffx.27222.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 38446-40213
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3835011/11Acyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38310OsAffx.27220.1.S1_at11/115+22372384..22374158Ubiquitin, putative
LOC_Os05g38320NANA5+22381371..22382861expressed protein
LOC_Os05g38330Os.5627.1.S1_at11/115+22384763..22388887expressed protein
LOC_Os05g38340NANA5+22390719..22391794retrotransposon protein, putative, LINE subclass
LOC_Os05g38350OsAffx.27222.1.S1_x_at11/115+22398553..22401036Acyltransferase family protein, expressed
LOC_Os05g38350OsAffx.27222.1.S1_at11/115+22398553..22401036Acyltransferase family protein, expressed
LOC_Os05g38350Os.33373.1.S2_x_at1/115+22398553..22401036Acyltransferase family protein, expressed
LOC_Os05g38360Os.25051.1.S1_at11/115+22405348..22408995DHHC zinc finger domain containing protein, expressed
LOC_Os05g38360Os.25051.2.S1_x_at10/115+22405348..22408995DHHC zinc finger domain containing protein, expressed
LOC_Os05g38360OsAffx.4553.1.S1_at10/115+22405348..22408995DHHC zinc finger domain containing protein, expressed
LOC_Os05g38370Os.11124.1.S1_at9/115+22409288..22411806FK506-binding protein 4, putative, expressed
LOC_Os05g38380NANA5+22413448..22413702hypothetical protein
LOC_Os05g38390OsAffx.27223.1.S1_at11/115+22418169..22419975laccase, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0003841molecular_function1-acylglycerol-3-phosphate O-acyltransferase activity
GO:0008415molecular_functionacyltransferase activity
GO:0008514molecular_functionorganic anion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27222.1.S1_at--449--7551Chr05:22400461..22400485 (25 bp)
GTGGCCGCCGTGACGTACTCCATCT
LOC_Os05g38350
OsAffx.27222.1.S1_at--868--4251Chr05:22400677..22400701 (25 bp)
CCGGTGGCGATGAACTACCGCGTCG
LOC_Os05g38350
OsAffx.27222.1.S1_at--75--4251Chr05:22400773..22400797 (25 bp)
CCGGTGTACGAGGTGACCTTCCTCA
LOC_Os05g38350
OsAffx.27222.1.S1_at--1033--4371Chr05:22400852..22400876 (25 bp)
CCAACTACGTGCAGAGGATACTCGC
LOC_Os05g38350
OsAffx.27222.1.S1_at--1129--2011Chr05:22400855..22400879 (25 bp)
ACTACGTGCAGAGGATACTCGCCGC
LOC_Os05g38350
OsAffx.27222.1.S1_at--466--1911Chr05:22400858..22400882 (25 bp)
ACGTGCAGAGGATACTCGCCGCCAA
LOC_Os05g38350
OsAffx.27222.1.S1_at--393--9031Chr05:22400861..22400885 (25 bp)
TGCAGAGGATACTCGCCGCCAAGCT
LOC_Os05g38350
OsAffx.27222.1.S1_at--913--2671Chr05:22400881..22400905 (25 bp)
AAGCTCGGGTTCGAGTGCACCACCT
LOC_Os05g38350
OsAffx.27222.1.S1_at--365--7671Chr05:22400887..22400911 (25 bp)
GGGTTCGAGTGCACCACCTTCACGC
LOC_Os05g38350
OsAffx.27222.1.S1_at--329--1131Chr05:22400894..22400918 (25 bp)
AGTGCACCACCTTCACGCGCAAGGA
LOC_Os05g38350
OsAffx.27222.1.S1_at--18--5191Chr05:22400912..22400936 (25 bp)
GCAAGGACAAGTACCGCGTGCTCGC
LOC_Os05g38350
Target Sequence 
GTGGCCGCCGTGACGTACTCCATCTCCCGCCTCTCGGAGGTCCTCTCGCCGATCCCGACGGTGCGGCTGACGCGCGACCG
CGGCGTGGACGCGGCGCAGATGCGCGCCGAGCTGTCGCGCGGCGACGTCGCGGTGTGCCCCGAGGGGACGACGTGCCGGG
AGCCCTTCCTGCTCCGCTTCTCCGCGCTGTTCGCCGAGCTCAGCGACCGGATCGTGCCGGTGGCGATGAACTACCGCGTC
GGGCTCTTCCACCCGACGACGGCGAGGGGGTGGAAGGCCATGGACCCCATCTTCTTCTTCATGAACCCGAGGCCGGTGTA
CGAGGTGACCTTCCTCAACCAGCTCCCCGCCGAGGAGACGTGCGCCGCCGGCAAGAGCGCCGTCGACGTCGCCAACTACG
TGCAGAGGATACTCGCCGCCAAGCTCGGGTTCGAGTGCACCACCTTCACGCGCAAGGACAAGTACCGCGTGCTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27222.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis