Browse Element(s) Details


Os.50106.1.S1_at

Description gb:AK119864.1
DB_XREF= gi:37989487
TID=Os.50106.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50106 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-179-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-179-A03, full insert sequence.
FL= gb:AK119864.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4279011/11IBR domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42760Os.52288.1.S1_at11/113+23766859..23770876IBR domain containing protein, expressed
LOC_Os03g42760Os.26818.2.S1_at1/113+23766859..23770876IBR domain containing protein, expressed
LOC_Os03g42770Os.53974.1.S1_at11/113+23771935..23778523U3 snoRNP-associated, putative, expressed
LOC_Os03g42780OsAffx.25501.1.S1_x_at11/113+23781927..23787061IBR domain containing protein, expressed
LOC_Os03g42780OsAffx.25501.1.S1_at11/113+23781927..23787061IBR domain containing protein, expressed
LOC_Os03g42780Os.7529.1.S1_at1/113+23781927..23787061IBR domain containing protein, expressed
LOC_Os03g42790Os.50106.1.S1_at11/113+23790357..23793881IBR domain containing protein, expressed
LOC_Os03g42810OsAffx.13312.1.S1_s_at11/113+23803324..23806384Type I inositol-1,4,5-trisphosphate 5-phosphatase 11, putative, expressed
LOC_Os03g42820Os.8892.1.S1_at11/113+23809481..23816235LIM domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50106.1.S1_at--1158--3391Chr03:23793333..23793357 (25 bp)
CAGAACCGGTTCGAGGATTTGCAGG
LOC_Os03g42790
Os.50106.1.S1_at--452--7651Chr03:23793492..23793516 (25 bp)
GGGATGTACCGGTGCGTCCAGGACG
LOC_Os03g42790
Os.50106.1.S1_at--459--4391Chr03:23793637..23793661 (25 bp)
GCCACTAAGCCACAACGTGTCGAGT
LOC_Os03g42790
Os.50106.1.S1_at--1002--1691Chr03:23793644..23793668 (25 bp)
AGCCACAACGTGTCGAGTTCATTAT
LOC_Os03g42790
Os.50106.1.S1_at--704--7211Chr03:23793655..23793679 (25 bp)
GTCGAGTTCATTATTACTATACGAA
LOC_Os03g42790
Os.50106.1.S1_at--929--5331Chr03:23793677..23793701 (25 bp)
GAAGCAAGGTTGTAAACGGTCGATG
LOC_Os03g42790
Os.50106.1.S1_at--326--3151Chr03:23793731..23793755 (25 bp)
AATTCTATTGTCCAAACATGTTTGT
LOC_Os03g42790
Os.50106.1.S1_at--163--2411Chr03:23793744..23793768 (25 bp)
AAACATGTTTGTGGTTTGGCATGGT
LOC_Os03g42790
Os.50106.1.S1_at--963--10811Chr03:23793759..23793783 (25 bp)
TTGGCATGGTGGATTTTTGGATTAA
LOC_Os03g42790
Os.50106.1.S1_at--271--172Chr03:23793841..23793865 (25 bp)
ATTTTGTGCTGATTAATTAGTCTAA
LOC_Os03g42790
Os.50106.1.S1_at--1004--10431Chr03:23793857..23793881 (25 bp)
TTAGTCTAATTGTTCGACGTTGTGC
LOC_Os03g42790
Target Sequence 
CAGAACCGGTTCGAGGATTTGCAGGGGCAGCTGGGGCACCACGTGGAGGTGCTGTCCAGGACGCTGGCGGCGGCGGCGCG
GCCGGCCGACGCGGCGGAGGTCGTGAAGGCGAAGCGCGACGCCGACAACCTCGCCCGCGTCGTCGAGGGGCTGTGCGCCG
GGATGTACCGGTGCGTCCAGGACGAGCTGCTGCCGCTGCTCGTCGAGCCCATGAACATCGCCGCGTACCATCCGGACGGC
CCGGCCATGGCCAAGGAGTTCCCGCCGGCGACCAGCGTGACCGGCGGAGCACCGCCGGCGACACGCCACTAAGCCACAAC
GTGTCGAGTTCATTATTACTATACGAAGCAAGGTTGTAAACGGTCGATGGGTGAAGGGAAGCAGGTGGTTTTGGGAAAAA
TTCTATTGTCCAAACATGTTTGTGGTTTGGCATGGTGGATTTTTGGATTAATTACTAGCTAAGTAGTATAGGAAATATCC
TATATTGATACAGAGGAAATGATGGATTATTTTGTGCTGATTAATTAGTCTAATTGTTCGACGTTGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50106.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis