Browse Element(s) Details


OsAffx.25501.1.S1_x_at

Description tigr:9631.m04119
TID=OsAffx.25501.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative U3 small nucleolar ribonucleoprotein complex-associated protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4278011/11IBR domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42750Os.17292.2.A1_s_at11/113+23751455..23762616roothairless 1, putative, expressed
LOC_Os03g42750Os.17292.1.S1_x_at10/113+23751455..23762616roothairless 1, putative, expressed
LOC_Os03g42760Os.52288.1.S1_at11/113+23766859..23770876IBR domain containing protein, expressed
LOC_Os03g42760Os.26818.2.S1_at1/113+23766859..23770876IBR domain containing protein, expressed
LOC_Os03g42770Os.53974.1.S1_at11/113+23771935..23778523U3 snoRNP-associated, putative, expressed
LOC_Os03g42780OsAffx.25501.1.S1_x_at11/113+23781927..23787061IBR domain containing protein, expressed
LOC_Os03g42780OsAffx.25501.1.S1_at11/113+23781927..23787061IBR domain containing protein, expressed
LOC_Os03g42780Os.7529.1.S1_at1/113+23781927..23787061IBR domain containing protein, expressed
LOC_Os03g42790Os.50106.1.S1_at11/113+23790357..23793881IBR domain containing protein, expressed
LOC_Os03g42810OsAffx.13312.1.S1_s_at11/113+23803324..23806384Type I inositol-1,4,5-trisphosphate 5-phosphatase 11, putative, expressed
LOC_Os03g42820Os.8892.1.S1_at11/113+23809481..23816235LIM domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25501.1.S1_x_at--494--2891Chr03:23786465..23786489 (25 bp)
AAGGTGCTCCGGTACGCGCACTACT
LOC_Os03g42780
OsAffx.25501.1.S1_x_at--305--7851Chr03:23786475..23786499 (25 bp)
GGTACGCGCACTACTACGAGCGGTA
LOC_Os03g42780
OsAffx.25501.1.S1_x_at--1004--9891Chr03:23786486..23786510 (25 bp)
TACTACGAGCGGTACAAGGCCCACG
LOC_Os03g42780
OsAffx.25501.1.S1_x_at--1008--7791Chr03:23786496..23786520 (25 bp)
GGTACAAGGCCCACGGCGACTCGCG
LOC_Os03g42780
OsAffx.25501.1.S1_x_at--822--4451Chr03:23786693..23786717 (25 bp)
GCCTACCACATGTTCGGCGGCGAGG
LOC_Os03g42780
OsAffx.25501.1.S1_x_at--1070--851Chr03:23786766..23786790 (25 bp)
AGGCGCTGTTCGAGGACCACCAGGA
LOC_Os03g42780
OsAffx.25501.1.S1_x_at--476--3751Chr03:23786906..23786930 (25 bp)
CTCACCGCCGTGGTGGAGAAGCACT
LOC_Os03g42780
OsAffx.25501.1.S1_x_at--253--1991Chr03:23786928..23786952 (25 bp)
ACTGCGGCGAGATGCACAAGTGCAT
LOC_Os03g42780
OsAffx.25501.1.S1_x_at--1062--651Chr03:23786939..23786963 (25 bp)
ATGCACAAGTGCATCCAGGACGAGC
LOC_Os03g42780
OsAffx.25501.1.S1_x_at--1073--5891Chr03:23786960..23786984 (25 bp)
GAGCTGCTGCCCATGCTCGTGGAGC
LOC_Os03g42780
OsAffx.25501.1.S1_x_at--931--4331Chr03:23786970..23786994 (25 bp)
CCATGCTCGTGGAGCCCATGTCCAT
LOC_Os03g42780
Target Sequence 
AAGGTGCTCCGGTACGCGCACTACTACGAGCGGTACAAGGCCCACGGCGACTCGCGCAGGGCGGAGGCGGAGAAGCTGGG
CCCGGCCATCGAGGCGCGGGCTCGGCGGCTGCGCGAGGACCCCGACCCGGCCACGGCGCCGGCCAGCGGCGACGCCGCCG
AGGCGCTCGCCGCCGCGCACCGCGCGCTGCTCGCCTCCCGCGACGTCCTCTCGCGGTCCTACGCCTTCGCCTACCACATG
TTCGGCGGCGAGGAGCGGACGTTGAAAGCGGCGGCGCCGGAGTCGGAGGTGGCGACGGCGCAGGCGCTGTTCGAGGACCA
CCAGGAGATGGCGGAGAGGCACGTGGAGAAGCTGTCGGGGCTGCTGGCGGCGGACGCGCCTCCGGCGCCGGCCACGGCGG
GGGACGCGGCCCTGCGGCGGGCGAAGCAGGACGCCGTGGCGCTCACCGCCGTGGTGGAGAAGCACTGCGGCGAGATGCAC
AAGTGCATCCAGGACGAGCTGCTGCCCATGCTCGTGGAGCCCATGTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25501.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis