Browse Element(s) Details


Os.17292.2.A1_s_at

Description gb:CB644564
DB_XREF= gi:29639555
DB_XREF=OSJNEb05N10.r
CLONE=OSJNEb05N10
TID=Os.17292.2
CNT=16
FEA=EST
TIER=Stack
STK=6
UG=Os.17292 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 29957 unknown mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4275011/11roothairless 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42690OsAffx.92.1.S1_at9/113+23728384..23732478transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g42690Os.47407.1.A1_at1/113+23728384..23732478transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g42700OsAffx.25497.1.S1_at11/113+23734469..23734778hypothetical protein
LOC_Os03g42710OsAffx.25498.1.S1_at11/113+23735539..23737020transducin family protein, putative
LOC_Os03g42720OsAffx.3493.1.S1_at11/113+23739610..23742050hypothetical protein
LOC_Os03g42730Os.46523.3.S1_x_at5/113+23743671..23745689hypothetical protein
LOC_Os03g42730Os.46523.1.S1_at4/113+23743671..23745689hypothetical protein
LOC_Os03g42740OsAffx.25499.1.S1_at11/113+23748704..23749653F-box family protein, putative
LOC_Os03g42750Os.17292.2.A1_s_at11/113+23751455..23762616roothairless 1, putative, expressed
LOC_Os03g42750Os.17292.1.S1_x_at10/113+23751455..23762616roothairless 1, putative, expressed
LOC_Os03g42760Os.52288.1.S1_at11/113+23766859..23770876IBR domain containing protein, expressed
LOC_Os03g42760Os.26818.2.S1_at1/113+23766859..23770876IBR domain containing protein, expressed
LOC_Os03g42770Os.53974.1.S1_at11/113+23771935..23778523U3 snoRNP-associated, putative, expressed
LOC_Os03g42780OsAffx.25501.1.S1_x_at11/113+23781927..23787061IBR domain containing protein, expressed
LOC_Os03g42780OsAffx.25501.1.S1_at11/113+23781927..23787061IBR domain containing protein, expressed
LOC_Os03g42780Os.7529.1.S1_at1/113+23781927..23787061IBR domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17292.2.A1_s_at--593--1291Chr03:23753507..23753531 (25 bp)
AGAGGCTGTTTCAGTTTTCTCGAAA
LOC_Os03g42750
Os.17292.2.A1_s_at--1128--5191Chr03:23753475..23753499 (25 bp)
GAATTGACATACACCATAGCTGCTG
LOC_Os03g42750
Os.17292.2.A1_s_at--853--8991Chr03:23752645..23752699 (25 bp)
TGAAGAGATTCCTTTCCAGCTAGGG
LOC_Os03g42750
Os.17292.2.A1_s_at--2--6151Chr03:23752600..23752624 (25 bp)
GAGGGTGATCAAATCCAGTTTATCT
LOC_Os03g42750
Os.17292.2.A1_s_at--1154--491Chr03:23752175..23752199 (25 bp)
ATCGGTGCCATGTATAGGAGGTTAC
LOC_Os03g42750
Os.17292.2.A1_s_at--34--5691Chr03:23752140..23752164 (25 bp)
GACTTCTGATGAGTTGTTTCCTTCA
LOC_Os03g42750
Os.17292.2.A1_s_at--83--6611Chr03:23752128..23752152 (25 bp)
GTTGTTTCCTTCACTGTGGGACAAG
LOC_Os03g42750
Os.17292.2.A1_s_at--668--6791Chr03:23751834..23751858 (25 bp)
GTTTTTGGACAAGTACGAGAGCTTC
LOC_Os03g42750
Os.17292.2.A1_s_at--879--4911Chr03:23751814..23751838 (25 bp)
GCTTCGTTCAGATGGTGACGCGGAT
LOC_Os03g42750
Os.17292.2.A1_s_at--475--2291Chr03:23751783..23751807 (25 bp)
AAATGAGCCCATCATGTCGGTTGCT
LOC_Os03g42750
Os.17292.2.A1_s_at--482--5571Chr03:23751753..23751777 (25 bp)
GAAAGATGTCCTTGCTAACTTCTAG
LOC_Os03g42750
Target Sequence 
AGAGGCTGTTTCAGTTTTCTCGAAAAGTCGATGAATTGACATACACCATAGCTGCTGAAGAGATTCCTTTCCAGCTAGGG
CTGTCAAAAACTGATCTAAGGAGGGTGATCAAATCCAGTTTATCTGGGATTGACAAGTCAATCGGTGCCATGTATAGGAG
GTTACAGAAGACACTGACTTCTGATGAGTTGTTTCCTTCACTGTGGGACAAGTGCAAGAAAGAGTTTTTGGACAAGTACG
AGAGCTTCGTTCAGATGGTGACGCGGATCTATGGAAATGAGCCCATCATGTCGGTTGCTGATATGAAAGATGTCCTTGCT
AACTTCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17292.2.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis