Browse Element(s) Details


Os.50224.1.S1_at

Description gb:AK120182.1
DB_XREF= gi:37989805
TID=Os.50224.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50224 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013034A14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013034A14, full insert sequence.
FL= gb:AK120182.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6911011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g69080Os.11114.1.S1_at11/111+40473633..40477673Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os01g69090Os.50999.1.S1_at10/111+40480075..40484031expressed protein
LOC_Os01g69100Os.4875.1.S1_at11/111+40494589..40497025expressed protein
LOC_Os01g69110Os.50224.1.S1_at11/111+40497771..40500139expressed protein
LOC_Os01g69120Os.27831.1.S1_at10/111+40502554..40509529expressed protein
LOC_Os01g69130Os.19079.1.S1_at11/111+40509609..40517730Dynamin-related protein 3A, putative, expressed
LOC_Os01g69140Os.55111.1.S1_at2/111+40519858..40521570regulatory protein, putative, expressed
LOC_Os01g69150NANA1+40523514..40524047transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50224.1.S1_at--1160--1291Chr01:40499297..40499404 (25 bp)
AGATGAAAGCTCTCTGCAGGGCCTA
LOC_Os01g69110
Os.50224.1.S1_at--1061--6411Chr01:40498618..40498642 (25 bp)
GATCTTATTCATGTCATTACTCCAA
LOC_Os01g69110
Os.50224.1.S1_at--520--5931Chr01:40498157..40498180 (24 bp)
GAGCATCAGTGCCTGATTCTGTGAA
LOC_Os01g69110
Os.50224.1.S1_at--242--9011Chr01:40498136..40498160 (25 bp)
TGAAGGCAGAGCTCCTGCAACGCAT
LOC_Os01g69110
Os.50224.1.S1_at--3--591Chr01:40498113..40498137 (25 bp)
ATCCAATCCTTTCTCATGTCTTCTT
LOC_Os01g69110
Os.50224.1.S1_at--663--9671Chr01:40498086..40498110 (25 bp)
TCACTTCGGTAGTCCATTTGTCGTA
LOC_Os01g69110
Os.50224.1.S1_at--1002--10251Chr01:40498070..40498094 (25 bp)
TTTGTCGTAATCACTGGAGCCGCAG
LOC_Os01g69110
Os.50224.1.S1_at--776--7411Chr01:40497949..40497973 (25 bp)
GTGTTGTCGACAATGTTTCTCTTGT
LOC_Os01g69110
Os.50224.1.S1_at--341--1251Chr01:40497915..40497939 (25 bp)
AGTTGGGCCTGTTCTCAGTCTGTAC
LOC_Os01g69110
Os.50224.1.S1_at--451--1731Chr01:40497890..40497914 (25 bp)
ACCTCTTTACCCTGCTTAGATGTGA
LOC_Os01g69110
Os.50224.1.S1_at--781--10231Chr01:40497801..40497825 (25 bp)
TTTGGTTGCCCCTGGATGATCGAAA
LOC_Os01g69110
Target Sequence 
AGATGAAAGCTCTCTGCAGGGCCTATGCAAGGAAGAAAGGAAGAAATAATGTTACAGTAGATGATCTTATTCATGTCATT
ACTCCAAAAGGAAGAGCATCAGTGCCTGATTCTGTGAAGGCAGAGCTCCTGCAACGCATCCAATCCTTTCTCATGTCTTC
TTCCTCACTTCGGTAGTCCATTTGTCGTAATCACTGGAGCCGCAGGTATGAAGGTTCGAAGCTGATCATGTGGGGAGGAG
CTATGCAGGAATACAATGCATCCTGTAATATCAACACCAAAACGATCGAGTGATATTTATAGTGTTGTCGACAATGTTTC
TCTTGTCAGGCAGGCAGTTGGGCCTGTTCTCAGTCTGTACACCTCTTTACCCTGCTTAGATGTGAACCTTGAAAAATGTA
TTTTGAATGGAAGCTTCCAGCTTGTTANNNNNNACTGTGTTGTGTTGGCTTTGGTTGCCCCTGGATGATCGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50224.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis