Browse Element(s) Details


Os.50245.1.S1_x_at

Description gb:AK120308.1
DB_XREF= gi:37989931
TID=Os.50245.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50245 (NCBI UniGene Cluster)
UG_TITLE=AKT1-like potassium channel mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013054N15, full insert sequence.
FL= gb:AK120308.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4599011/11Potassium channel AKT6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45940OsAffx.2245.1.S1_at10/111+26422086..26422434hypothetical protein
LOC_Os01g45960Os.21836.1.S1_at11/111+26433684..26438061hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g45970Os.8626.1.S1_a_at11/111+26438803..26440973expressed protein
LOC_Os01g45970Os.8626.2.S1_at11/111+26438803..26440973expressed protein
LOC_Os01g45970Os.8626.3.S1_s_at7/111+26438803..26440973expressed protein
LOC_Os01g45970Os.8626.1.S1_x_at6/111+26438803..26440973expressed protein
LOC_Os01g45970Os.8626.3.S1_x_at4/111+26438803..26440973expressed protein
LOC_Os01g45990Os.50245.1.S1_x_at11/111+26446568..26453013Potassium channel AKT6, putative, expressed
LOC_Os01g46000Os.46012.2.S1_x_at9/111+26470581..26476285retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g46000Os.27088.1.A1_x_at6/111+26470581..26476285retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g46000Os.46012.3.S1_x_at6/111+26470581..26476285retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0009860biological_processpollen tube growth
GO:0005886cellular_componentplasma membrane
GO:0005242molecular_functioninward rectifier potassium channel activity
GO:0005267molecular_functionpotassium channel activity
GO:0030551molecular_functioncyclic nucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50245.1.S1_x_at--669--1671Chr01:26447128..26447152 (25 bp)
AGCCGCAACGCCGTCATCAGGGTGA
LOC_Os01g45990
Os.50245.1.S1_x_at--588--7351Chr01:26447107..26447131 (25 bp)
GTGACGATCAGCTGCCCCGAGAAAG
LOC_Os01g45990
Os.50245.1.S1_x_at--1057--5891Chr01:26447029..26447053 (25 bp)
GAGCTCGGCGCCAAGAAGTTCGACT
LOC_Os01g45990
Os.50245.1.S1_x_at--25--1711Chr01:26446996..26447020 (25 bp)
ACCAAGGTTCTCACCGTGGAGGGCG
LOC_Os01g45990
Os.50245.1.S1_x_at--629--5911Chr01:26446954..26446978 (25 bp)
GAGCTCATCAGAGACGGCGATCATC
LOC_Os01g45990
Os.50245.1.S1_x_at--272--1951Chr01:26446941..26446965 (25 bp)
ACGGCGATCATCTTGTGCTCGTCAG
LOC_Os01g45990
Os.50245.1.S1_x_at--181--6031Chr01:26446809..26446833 (25 bp)
GAGATAGAATTTACCCCGGAGTCCA
LOC_Os01g45990
Os.50245.1.S1_x_at--187--5611Chr01:26446723..26446747 (25 bp)
GAAATTGATGGGTTACGTCCGGTGT
LOC_Os01g45990
Os.50245.1.S1_x_at--1097--3991Chr01:26446659..26446683 (25 bp)
CGTGTTGTGATGTTAGCCTGTTTTT
LOC_Os01g45990
Os.50245.1.S1_x_at--133--8231Chr01:26446625..26446649 (25 bp)
GGCAAGTTGATCTGCTGGCATGTAC
LOC_Os01g45990
Os.50245.1.S1_x_at--685--8271Chr01:26446609..26446633 (25 bp)
GGCATGTACAGTTTTACGCTTTTCT
LOC_Os01g45990
Target Sequence 
AGCCGCAACGCCGTCATCAGGGTGACGATCAGCTGCCCCGAGAAAGGGAACACCGCCGGGAAGCTCGTGCTCCTNCCTCA
GACGCTGGACATGCTCCTCGAGCTCGGCGCCAAGAAGTTCGACTTCGCGCCAACCAAGGTTCTCACCGTGGAGGGCGCCG
AGGTTGACGAGGTGGAGCTCATCAGAGACGGCGATCATCTTGTGCTCGTCAGTNATGAATGGGATGCAGAGAAGATGAAA
GGCAAGAGCTAGTAAAGGAGTTGTGTGTTTTTTTTNCTTTTNCTTTTTTGGTTGTTTACTGTTGATTTCCAAGAAAGGGG
AGATAGAATTTACCCCGGAGTCCAACGGTTAGCTAAGGAATAACTGGAAATCATTGGTATAGTTATTCCACCATGAAGAG
ATGGTGAAATTGATGGGTTACGTCCGGTGTTCGTAAGTAGAGAAGCGTAAGAATTTGATTTTGTTATAGCGTGTTGTGAT
GTTAGCCTGTTTTTGTTTTAGTTGGCAAGTTGATCTGCTGGCATGTACAGTTTTACGCTTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50245.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis