Browse Element(s) Details


Os.50352.1.S1_at

Description gb:AK071801.1
DB_XREF= gi:32981824
TID=Os.50352.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50352 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023110J22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023110J22, full insert sequence.
FL= gb:AK071801.1 gb:AK120831.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1469010/11Flavin-binding monooxygenase-like family protein, expressed
LOC_Os04g147102/11Flavin-binding monooxygenase-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g14654Os.52443.1.S1_at11/114+8196368..8213126Vacuolar protein-sorting protein 33 homolog, putative, expressed
LOC_Os04g14670Os.46012.2.S1_x_at5/114+8216961..8218445retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g14670Os.46012.3.S1_x_at5/114+8216961..8218445retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g14670Os.27088.1.A1_x_at2/114+8216961..8218445retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g14670Os.54691.1.S1_x_at1/114+8216961..8218445retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g14680Os.4987.1.S1_at11/114+8219095..8221710L-ascorbate peroxidase 3, putative, expressed
LOC_Os04g14690Os.55278.1.S1_at11/114+8223589..8229773Flavin-binding monooxygenase-like family protein, expressed
LOC_Os04g14690Os.50352.1.S1_at10/114+8223589..8229773Flavin-binding monooxygenase-like family protein, expressed
LOC_Os04g14700NANA4+8232202..8235347retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g14710Os.50352.1.S1_at2/114+8242966..8248397Flavin-binding monooxygenase-like family protein, expressed
LOC_Os04g14710OsAffx.9287.1.S1_at1/114+8242966..8248397Flavin-binding monooxygenase-like family protein, expressed
LOC_Os04g14719NANA4+8250391..8251356NA
LOC_Os04g14730NANA4+8254569..8255024expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0004497molecular_functionmonooxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50352.1.S1_at--555--9892Chr04:8243576..8243600 (25 bp)
TACTTTCAGAGCATTGCAGTAGGCT
LOC_Os04g14710
Os.50352.1.S1_at--726--1191Chr04:8224227..8224251 (25 bp)
AGTAGGCTCTGCATCTACAACTGTA
LOC_Os04g14690
Os.50352.1.S1_at--662--2191Chr04:8224215..8224235 (21 bp)
ACAACTGTACCTCTCTACAGGGAGA
LOC_Os04g14690
Os.50352.1.S1_at--531--8051Chr04:8224090..8224114 (25 bp)
GGAGATCATTCACCCAAAGATCCCG
LOC_Os04g14690
Os.50352.1.S1_at--757--1591Chr04:8224064..8224088 (25 bp)
AGCTCGCGGTTATCGGCTATTCAGA
LOC_Os04g14690
Os.50352.1.S1_at--16--3951Chr04:8224051..8224075 (25 bp)
CGGCTATTCAGAGAGCTTGGCAAAT
LOC_Os04g14690
Os.50352.1.S1_at--521--1551Chr04:8224038..8224062 (25 bp)
AGCTTGGCAAATCTCTACACATCAG
LOC_Os04g14690
Os.50352.1.S1_at--1147--9851Chr04:8224023..8224047 (25 bp)
TACACATCAGAATTACGGGCCAAGT
LOC_Os04g14690
Os.50352.1.S1_at--739--3911Chr04:8223996..8224020 (25 bp)
CTGGCACATTTCATGGATGGTGGCT
LOC_Os04g14690
Os.50352.1.S1_at--135--7732Chr04:8243300..8243324 (25 bp)
GGTGGCTTCAGGTTGCCAAGCATCA
LOC_Os04g14710
Os.50352.1.S1_at--728--10411NONE
TTATTCGCACGTTTAATGGCCCTAG
NONE
Target Sequence 
TACTTTCAGAGCATTGCAGTAGGCTCTGCATCTACAACTGTACCTCTCTACAGGGAGATCATTCACCCAAAGATCCCGCA
GCTCGCGGTTATCGGCTATTCAGAGAGCTTGGCAAATCTCTACACATCAGAATTACGGGCCAAGTGGCTGGCACATTTCA
TGGATGGTGGCTTCAGGTTGCCAAGCATCAGTGTGATGCAGAATGATGNCCTGGAATGGNAGANGTTCATGAAGCGCTAT
TNTNGTGGNTACTTTNGCAGATNCTGCATCGGAATCNTTCACATCTGGTACAATGATCAGCTANGCCGGNACATGGGGNN
CAATCCGAGGAGGAAGAACGGATTCTGGGCTNATTTATTCGCACGTTTAATGGCCCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50352.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis