Browse Element(s) Details


Os.50419.1.S2_at

Description gb:AK121134.1
DB_XREF= gi:37990757
TID=Os.50419.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50419 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023139I23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023076J04, full insert sequence.
FL= gb:AK121134.1 gb:AK072780.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2888011/11uncharacterized plant-specific domain TIGR01570 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28850Os.49127.1.S1_at11/119+17533413..17536817expressed protein
LOC_Os09g28860OsAffx.17955.1.S1_at11/119+17541290..17542005Late embryogenesis abundant protein D-34, putative
LOC_Os09g28869NANA9+17543887..17544416NA
LOC_Os09g28880Os.50419.1.S2_at11/119+17549265..17552888uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os09g28880Os.50419.1.S1_x_at11/119+17549265..17552888uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os09g28890Os.49181.1.S1_at11/119+17555973..17557590transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os09g28900NANA9+17564470..17565196Helix-loop-helix DNA-binding domain containing protein
LOC_Os09g28910Os.19131.1.A1_at11/119+17566631..17571326Carbonic anhydrase family protein, expressed
LOC_Os09g28910OsAffx.30069.1.S1_at11/119+17566631..17571326Carbonic anhydrase family protein, expressed
LOC_Os09g28920NANA9+17576912..17577926expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50419.1.S2_at--409--9611Chr09:17552291..17552315 (25 bp)
TCAAGACTTCCTCATTAAACCCTTC
LOC_Os09g28880
Os.50419.1.S2_at--628--3971Chr09:17552316..17552340 (25 bp)
CGGTGCACACTCGATCGGGTGATTA
LOC_Os09g28880
Os.50419.1.S2_at--304--2251Chr09:17552362..17552386 (25 bp)
AAATTAGCGTGTACCAAGCTCAGGG
LOC_Os09g28880
Os.50419.1.S2_at--754--451Chr09:17552445..17552469 (25 bp)
ATCTCTTAGTTGGTTTCTTGTTAGG
LOC_Os09g28880
Os.50419.1.S2_at--193--6471Chr09:17552511..17552535 (25 bp)
GATAAAATCACCCAACACGTCGCAC
LOC_Os09g28880
Os.50419.1.S2_at--738--9551Chr09:17552564..17552588 (25 bp)
TCTTTTCTACAAAGCGGGCAGAGCT
LOC_Os09g28880
Os.50419.1.S2_at--1140--551Chr09:17552601..17552625 (25 bp)
ATCCTCGTGCTTGGTGTCAATCGAT
LOC_Os09g28880
Os.50419.1.S2_at--1072--11Chr09:17552672..17552696 (25 bp)
ATTGGCTCGGATACACAGTTATTCT
LOC_Os09g28880
Os.50419.1.S2_at--482--2451Chr09:17552714..17552738 (25 bp)
AAAATCAGTCTCTCATCCACTATAC
LOC_Os09g28880
Os.50419.1.S2_at--843--131Chr09:17552767..17552791 (25 bp)
ATTACACTGTATTTCGTTTCGATAA
LOC_Os09g28880
Os.50419.1.S2_at--469--8931Chr09:17552810..17552834 (25 bp)
TGACCTCTCTTTCTCCAAAAACAAA
LOC_Os09g28880
Target Sequence 
TCAAGACTTCCTCATTAAACCCTTCCGGTGCACACTCGATCGGGTGATTAGGTTTAGGGTTTGTGTAGAGAAAATTAGCG
TGTACCAAGCTCAGGGGTTATCTCTAATTAGGATTTGAATCCATTTTTTTTACCAATCACGCAAAAGCAGATTTATCTCT
TAGTTGGTTTCTTGTTAGGAAAGAATTTTATCCTTTCCCTAATCTTATTAGTCATTAGTCGATAAAATCACCCAACACGT
CGCACCTCCAATAGGTGAATCCAAGATTTCGATTCTTTTCTACAAAGCGGGCAGAGCTACTGATCTGGCCATCCTCGTGC
TTGGTGTCAATCGATGAGCTTGTGATGATGATATTAAACAGTCAACGGCGGGTGTAGTAAAATTGGCTCGGATACACAGT
TATTCTCACTTCATATACAAATTAAAATCAGTCTCTCATCCACTATACCAACATCATTGTAAGTCCAATATAGGATATTA
CACTGTATTTCGTTTCGATAATAGAAACGGGAGTAGGCCTGACCTCTCTTTCTCCAAAAACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50419.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis