Browse Element(s) Details


Os.50429.1.S1_at

Description gb:AK121171.1
DB_XREF= gi:37990794
TID=Os.50429.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50429 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023081C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023081C04, full insert sequence.
FL= gb:AK121171.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5416011/11Floral homeotic protein APETALA1, putative, expressed
LOC_Os08g442201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g54084OsAffx.25710.1.S1_at11/113+30955132..30964347Phytochrome C, putative, expressed
LOC_Os03g54084Os.24622.1.A1_at11/113+30955132..30964347Phytochrome C, putative, expressed
LOC_Os03g54084Os.3383.1.S1_a_at10/113+30955132..30964347Phytochrome C, putative, expressed
LOC_Os03g54100Os.14641.1.S1_at7/113+30965240..30967857calcium-activated outward-rectifying potassium channel 5,chloroplast precursor, putative, expressed
LOC_Os03g54114OsAffx.25711.1.S1_at10/113+30970384..30973078hypothetical protein
LOC_Os03g54130Os.51579.1.S1_at11/113+30973787..30975621Papain family cysteine protease containing protein, expressed
LOC_Os03g54130Os.11707.1.A1_at11/113+30973787..30975621Papain family cysteine protease containing protein, expressed
LOC_Os03g54150Os.17640.1.S1_at11/113+30977948..30982102expressed protein
LOC_Os03g54160Os.2348.1.S1_a_at11/113+30982122..30991960Floral homeotic protein APETALA1, putative, expressed
LOC_Os03g54160Os.50429.1.S1_at11/113+30982122..30991960Floral homeotic protein APETALA1, putative, expressed
LOC_Os03g54160Os.2348.1.S1_at10/113+30982122..30991960Floral homeotic protein APETALA1, putative, expressed
LOC_Os03g54160Os.2348.2.S1_x_at6/113+30982122..30991960Floral homeotic protein APETALA1, putative, expressed
LOC_Os03g54170Os.49761.1.S1_at11/113+30998772..31005425MADS-box protein CMB1, putative, expressed
LOC_Os03g54180NANA3+31010290..31010564hypothetical protein
LOC_Os03g54190OsAffx.13487.1.S1_at11/113+31014511..31016225expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008219biological_processcell death
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0009908biological_processflower development
GO:0009911biological_processpositive regulation of flower development
GO:0009933biological_processmeristem organization
GO:0010154biological_processfruit development
GO:0045941biological_processpositive regulation of transcription
GO:0048481biological_processovule development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0010175molecular_functionsphingosine transporter activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50429.1.S1_at--126--5711Chr03:30985481..30985505 (25 bp)
GACTACATCAACACTCATTATGGAA
LOC_Os03g54160
Os.50429.1.S1_at--578--10091Chr03:30985463..30985487 (25 bp)
TATGGAATTTTGTGTGCCAGAGAAT
LOC_Os03g54160
Os.50429.1.S1_at--1086--5471Chr03:30985390..30985414 (25 bp)
GAACTTTTGGCGTGGCTCATCAGAA
LOC_Os03g54160
Os.50429.1.S1_at--361--9771Chr03:30985350..30985374 (25 bp)
TAATCCTTGTTTTCATTTAGCTGGG
LOC_Os03g54160
Os.50429.1.S1_at--1102--10451Chr03:30985334..30985358 (25 bp)
TTAGCTGGGACTTACTATAGTCAAT
LOC_Os03g54160
Os.50429.1.S1_at--822--2791Chr03:30985297..30985321 (25 bp)
AAGATCCATTCGTCTATTTGTTACG
LOC_Os03g54160
Os.50429.1.S1_at--531--7611Chr03:30985250..30985274 (25 bp)
GGGTTGATGGACTAATGGTGTACTC
LOC_Os03g54160
Os.50429.1.S1_at--32--7751Chr03:30985234..30985258 (25 bp)
GGTGTACTCCAAAATCAGAAGTTCT
LOC_Os03g54160
Os.50429.1.S1_at--899--3411Chr03:30985219..30985243 (25 bp)
CAGAAGTTCTTTTATGGCTAGATAC
LOC_Os03g54160
Os.50429.1.S1_at--566--8291Chr03:30985204..30985228 (25 bp)
GGCTAGATACATGTAGACCGGATTT
LOC_Os03g54160
Os.50429.1.S1_at--453--89722Chr12:20983041..20983252 (25 bp)
TGAAAACTTTCGACCCAGATTTGAA
NONE
Target Sequence 
GACTACATCAACACTCATTATGGAATTTTGTGTGCCAGAGAATATCACAAAACATATTTTTCATCAAATAAAACAAAATA
AACATTTTCCAGAACTTTTGGCGTGGCTCATCAGAAGTTTGGAACCTTAAATAATCCTTGTTTTCATTTAGCTGGGACTT
ACTATAGTCAATTATGCTATTAAAAAGATCCATTCGTCTATTTGTTACGAATAATCTTTACTCTTTAGTTGGGGTTGATG
GACTAATGGTGTACTCCAAAATCAGAAGTTCTTTTATGGCTAGATACATGTAGACCGGATTTGAAAACTTTCAAGTTTAG
ATTTGACAAAAACTTTCAACTCGCGATTGAAAATTTTCAAGTCCACATTTGAAAACTTTCAAGTTTAGATTTGAAAACTT
TCGACCCAGATTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50429.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis