Browse Element(s) Details


Os.50434.1.S1_at

Description gb:AK121179.1
DB_XREF= gi:37990802
TID=Os.50434.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50434 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023083J24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023083J24, full insert sequence.
FL= gb:AK121179.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g189901/11histidine triad family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g18954Os.47463.1.S1_x_at6/1111+10777296..10780993transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g18954Os.14491.2.S1_x_at5/1111+10777296..10780993transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g18961NANA11+10783652..10786984transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g18970OsAffx.31051.1.S1_at11/1111+10790591..10791272hypothetical protein
LOC_Os11g18980OsAffx.7151.1.S1_at11/1111+10792812..10796566hypothetical protein
LOC_Os11g18980Os.56177.1.S1_at11/1111+10792812..10796566hypothetical protein
LOC_Os11g18980Os.41248.2.A1_at4/1111+10792812..10796566hypothetical protein
LOC_Os11g18980Os.41248.5.S1_x_at2/1111+10792812..10796566hypothetical protein
LOC_Os11g18990Os.50434.1.S1_at1/1111+10803308..10804956histidine triad family protein, putative
LOC_Os11g19000NANA11+10814264..10814881transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19010NANA11+10816380..10817165transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19020NANA11+10817680..10818980hypothetical protein
LOC_Os11g19030OsAffx.20725.4.S1_at11/1111+10823173..10833313hypothetical protein
LOC_Os11g19030OsAffx.20725.4.S1_x_at10/1111+10823173..10833313hypothetical protein
LOC_Os11g19030OsAffx.20725.3.S1_x_at3/1111+10823173..10833313hypothetical protein
LOC_Os11g19030OsAffx.20725.1.S1_at2/1111+10823173..10833313hypothetical protein
LOC_Os11g19030OsAffx.20725.1.S1_x_at1/1111+10823173..10833313hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50434.1.S1_at--984--4812Chr11:10803580..10803604 (25 bp)
GCTCTTCTTCCGCTGAGAATTTGGG
LOC_Os11g18990
Os.50434.1.S1_at--115--531Chr02:15994666..15994690 (25 bp)
ATCGCAACGGCACATAATTTTTCTA
NONE
Os.50434.1.S1_at--1072--3891Chr02:15994630..15994654 (25 bp)
CTGGTTCGTAGTTGCAATGCGTCTC
NONE
Os.50434.1.S1_at--1025--3011Chr02:15994615..15994639 (25 bp)
AATGCGTCTCCTGATTGATGCGAAG
NONE
Os.50434.1.S1_at--1036--191Chr02:15994461..15994485 (25 bp)
ATTTCGAGGTGCATTCATCTAGTAG
NONE
Os.50434.1.S1_at--254--6951Chr02:15994440..15994464 (25 bp)
GTAGTTGATTTCGATCTTGCCGTGT
NONE
Os.50434.1.S1_at--468--4051Chr02:15994429..15994453 (25 bp)
CGATCTTGCCGTGTTGTGACTGTTA
NONE
Os.50434.1.S1_at--595--3591Chr02:15994398..15994422 (25 bp)
CATTCAGCTTGTTTTGGATCCTTTT
NONE
Os.50434.1.S1_at--622--7971Chr02:15994383..15994407 (25 bp)
GGATCCTTTTGTTAGATGCCCTTTA
NONE
Os.50434.1.S1_at--384--1291Chr02:15994370..15994394 (25 bp)
AGATGCCCTTTAACTTGAGCTATTA
NONE
Os.50434.1.S1_at--504--9031Chr02:15994315..15994339 (25 bp)
TGCACTTTGTGCCTCTTTTAGAATG
NONE
Target Sequence 
GCTCTTCTTCCGCTGAGAATTTGGGGGTGAATAGAAATCGCAACGGCACATAATTTTTCTAATTATTATTTTCTGGTTCG
TAGTTGCAATGCGTCTCCTGATTGATGCGAAGCGCATGGGCTCCCCTTCCTTCACAGTGTACCATCGACGACCGCGAGCT
CGCGTTGGCCATGGCCGCAGCTGCTGGCGATTTGGAGTAAGCCTCCTGGCTCTGCGTAGACGTGAGTTAACTTGATCTGA
TATTTCGAGGTGCATTCATCTAGTAGTTGATTTCGATCTTGCCGTGTTGTGACTGTTATATTTACATTCAGCTTGTTTTG
GATCCTTTTGTTAGATGCCCTTTAACTTGAGCTATTAAGGGTTGGACAGAATTTTGGTAGAGTGAATTGCACTTTGTGCC
TCTTTTAGAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50434.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis