Browse Element(s) Details


OsAffx.7151.1.S1_at

Description tigr:9639.m01762
TID=OsAffx.7151.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to S-receptor kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1898011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g18947Os.21166.1.A1_at11/1111+10764536..10769596Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g18954Os.47463.1.S1_x_at6/1111+10777296..10780993transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g18954Os.14491.2.S1_x_at5/1111+10777296..10780993transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g18961NANA11+10783652..10786984transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g18970OsAffx.31051.1.S1_at11/1111+10790591..10791272hypothetical protein
LOC_Os11g18980OsAffx.7151.1.S1_at11/1111+10792812..10796566hypothetical protein
LOC_Os11g18980Os.56177.1.S1_at11/1111+10792812..10796566hypothetical protein
LOC_Os11g18980Os.41248.2.A1_at4/1111+10792812..10796566hypothetical protein
LOC_Os11g18980Os.41248.5.S1_x_at2/1111+10792812..10796566hypothetical protein
LOC_Os11g18990Os.50434.1.S1_at1/1111+10803308..10804956histidine triad family protein, putative
LOC_Os11g19000NANA11+10814264..10814881transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19010NANA11+10816380..10817165transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19020NANA11+10817680..10818980hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7151.1.S1_at--630--6291Chr11:10796005..10796029 (25 bp)
GATGATCCAGGCAAAATTCCCACGA
LOC_Os11g18980
OsAffx.7151.1.S1_at--711--8851Chr11:10796091..10796115 (25 bp)
TGATGCAGAATTCCAGGTTCCTCCG
LOC_Os11g18980
OsAffx.7151.1.S1_at--1109--2511Chr11:10796123..10796147 (25 bp)
AACTTCGACGGCCTTGAGATCGGCA
LOC_Os11g18980
OsAffx.7151.1.S1_at--989--2511Chr11:10796250..10796274 (25 bp)
AACTCGGTGACCTGCAATTCCTTTC
LOC_Os11g18980
OsAffx.7151.1.S1_at--293--9951Chr11:10796286..10796310 (25 bp)
TACGCGGCACTTCTTACACAGTGAG
LOC_Os11g18980
OsAffx.7151.1.S1_at--774--1111Chr11:10796305..10796329 (25 bp)
AGTGAGCCAGCTTATCTTCGATCAT
LOC_Os11g18980
OsAffx.7151.1.S1_at--983--6431Chr11:10796324..10796348 (25 bp)
GATCATGGATTTCATAGCCTCACGG
LOC_Os11g18980
OsAffx.7151.1.S1_at--774--8911Chr11:10796358..10796382 (25 bp)
TGAGCGCGGAGAACCTTGACAGGAT
LOC_Os11g18980
OsAffx.7151.1.S1_at--267--5571Chr11:10796384..10796408 (25 bp)
GAAATACATGAGTTGGCACTTCCCA
LOC_Os11g18980
OsAffx.7151.1.S1_at--166--8911Chr11:10796455..10796479 (25 bp)
TGAGATCCATGGTCGCCTTGTGAGA
LOC_Os11g18980
OsAffx.7151.1.S1_at--746--5551Chr11:10796500..10796524 (25 bp)
GAAACCTTTTAAGATCCTGCATGTA
LOC_Os11g18980
Target Sequence 
GATGATCCAGGCAAAATTCCCACGACAATGGGCCAAGAAGAAGAAGAAGAAGAAGAAGAAGCAGACTAAGTCATGCATAC
AGAAGCTGATGCAGAATTCCAGGTTCCTCCGTGTTGCCAACTTCGACGGCCTTGAGATCGGCAAGAAGCTGCCCTCCGAG
GAATTCATCAAACAACTCGGTGACCTGCAATTCCTTTCCGCGCTCACTCTACGCGGCACTTCTTACACAGTGAGCCAGCT
TATCTTCGATCATGGATTTCATAGCCTCACGGAGCTGATGGTGAGCGCGGAGAACCTTGACAGGATCGAAATACATGAGT
TGGCACTTCCCAAACTTAAGGATCTGGATGTTGTCGGCCATGGCAATGATTTCCATGTTGAGATCCATGGTCGCCTTGTG
AGAGGCATCAAAGGTGAGGATGAGAAACCTTTTAAGATCCTGCATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7151.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis