Browse Element(s) Details


Os.21166.1.A1_at

Description gb:AK101298.1
DB_XREF= gi:32986507
TID=Os.21166.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.21166 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033033J06, full insert sequence.
FL= gb:AK101298.1 gb:AK107153.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1894711/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g18930OsAffx.18933.1.S1_at11/1111+10742991..10743376expressed protein
LOC_Os11g18940Os.8397.1.S1_at11/1111+10754381..10756057WW domain containing protein, expressed
LOC_Os11g18947Os.21166.1.A1_at11/1111+10764536..10769596Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g18954Os.47463.1.S1_x_at6/1111+10777296..10780993transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g18954Os.14491.2.S1_x_at5/1111+10777296..10780993transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g18961NANA11+10783652..10786984transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g18970OsAffx.31051.1.S1_at11/1111+10790591..10791272hypothetical protein
LOC_Os11g18980OsAffx.7151.1.S1_at11/1111+10792812..10796566hypothetical protein
LOC_Os11g18980Os.56177.1.S1_at11/1111+10792812..10796566hypothetical protein
LOC_Os11g18980Os.41248.2.A1_at4/1111+10792812..10796566hypothetical protein
LOC_Os11g18980Os.41248.5.S1_x_at2/1111+10792812..10796566hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21166.1.A1_at--1092--8171Chr11:10765040..10765064 (25 bp)
GGAAGTACAGTCAGCAAAGCTCCTG
LOC_Os11g18947
Os.21166.1.A1_at--374--6911Chr11:10764852..10764876 (25 bp)
GTATCCATATCTACTGCTGGTTCGA
LOC_Os11g18947
Os.21166.1.A1_at--128--4731Chr11:10764837..10764861 (25 bp)
GCTGGTTCGATTGCTTCACAGTTGA
LOC_Os11g18947
Os.21166.1.A1_at--619--691Chr11:10764800..10764824 (25 bp)
ATGAGCTATCTGTTTCTTTGTAGTT
LOC_Os11g18947
Os.21166.1.A1_at--1099--10671Chr11:10764759..10764783 (25 bp)
TTCCATTTCATTTCTGGTTGCGGTT
LOC_Os11g18947
Os.21166.1.A1_at--1095--3891Chr11:10764746..10764770 (25 bp)
CTGGTTGCGGTTAGCGTCTGTATAA
LOC_Os11g18947
Os.21166.1.A1_at--993--2211Chr11:10764650..10764674 (25 bp)
ACAAGCTTCATGTATATCCTTCGCC
LOC_Os11g18947
Os.21166.1.A1_at--41--10151Chr11:10764636..10764660 (25 bp)
TATCCTTCGCCTTTTGATTAGTCAG
LOC_Os11g18947
Os.21166.1.A1_at--58--3691Chr11:10764608..10764632 (25 bp)
CTATTAAGTCCCCTGTTGTGAAACA
LOC_Os11g18947
Os.21166.1.A1_at--60--2091Chr11:10764556..10764580 (25 bp)
ACATTTGCCTGCTTTATAATCTCGG
LOC_Os11g18947
Os.21166.1.A1_at--744--10171Chr11:10764542..10764566 (25 bp)
TATAATCTCGGCATCTTTTTTGGGT
LOC_Os11g18947
Target Sequence 
GGAAGTACAGTCAGCAAAGCTCCTGATNTATCAACCTGGTCAGACGGGGGTGCTATTGGAATGAATTTTGAGAAAACTAA
GGGAAAATAATTGAAGACGGGAATGGCTTGAAATTTGTTAAATATCATCTCAGCTTTTTACATTTTGTTTGAAGCATTAA
CTGTTCATGACAACAGGAGGATTTGTTNGTATCCATATCTACTGCTGGTTCGATTGCTTCACAGTTGATGAAACCCCCAG
ATGAGCTATCTGTTTCTTTGTAGTTTTGAACTTGGGATGTCTTCCATTTCATTTCTGGTTGCGGTTAGCGTCTGTATAAA
TCATGACACGTTAGATAGGTGACAGGGAAAAAAAACTTTATTCTAATTTATGTTCAACGATCAAAGCTGTACAAGCTTCA
TGTATATCCTTCGCCTTTTGATTAGTCAGGGACTATTAAGTCCCCTGTTGTGAAACAAGTTGGCTGATTTATGTAAAATG
GTATACATTTGCCTGCTTTATAATCTCGGCATCTTTTTTGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21166.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis