Browse Element(s) Details


Os.8397.1.S1_at

Description gb:AK062429.1
DB_XREF= gi:32972447
TID=Os.8397.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8397 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-107-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-102-H07, full insert sequence.
FL= gb:AK105190.1 gb:AK062429.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1894011/11WW domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g18900OsAffx.7150.1.S1_at11/1111+10729372..10731900hypothetical protein
LOC_Os11g18910NANA11+10732422..10733606retrotransposon, putative, centromere-specific
LOC_Os11g18919OsAffx.18932.1.S1_at11/1111+10736017..10737106hypothetical protein
LOC_Os11g18930OsAffx.18933.1.S1_at11/1111+10742991..10743376expressed protein
LOC_Os11g18940Os.8397.1.S1_at11/1111+10754381..10756057WW domain containing protein, expressed
LOC_Os11g18947Os.21166.1.A1_at11/1111+10764536..10769596Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g18954Os.47463.1.S1_x_at6/1111+10777296..10780993transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g18954Os.14491.2.S1_x_at5/1111+10777296..10780993transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8397.1.S1_at--684--9391Chr11:10755519..10755543 (25 bp)
TCGTTGGGACCAATGGTGGCCGTCC
LOC_Os11g18940
Os.8397.1.S1_at--553--4831Chr11:10755695..10755719 (25 bp)
GCTCAGCCTTCTGCACTAAAGCAAA
LOC_Os11g18940
Os.8397.1.S1_at--866--2291Chr11:10755784..10755808 (25 bp)
AAATGTGTTAATTACTACTCAGCAG
LOC_Os11g18940
Os.8397.1.S1_at--154--7311Chr11:10755844..10755868 (25 bp)
GTGCTGTGTGTGTGGATCAATTTAC
LOC_Os11g18940
Os.8397.1.S1_at--222--3191Chr11:10755861..10755885 (25 bp)
CAATTTACTGTATGAGTGCTGCACA
LOC_Os11g18940
Os.8397.1.S1_at--481--7311Chr11:10755876..10755900 (25 bp)
GTGCTGCACATGCTACATTGCTTCA
LOC_Os11g18940
Os.8397.1.S1_at--643--9071Chr11:10755894..10755918 (25 bp)
TGCTTCAATGCAAATGAGGCGATCA
LOC_Os11g18940
Os.8397.1.S1_at--294--6531Chr11:10755931..10755955 (25 bp)
GATTAATTAAGCGTACTTCCCCTGC
LOC_Os11g18940
Os.8397.1.S1_at--465--3051Chr11:10755971..10755995 (25 bp)
AATCGAGGATGGTGATGCTCCCCTG
LOC_Os11g18940
Os.8397.1.S1_at--1042--9031Chr11:10755994..10756018 (25 bp)
TGCACCATCATAAAGTCCCATCACT
LOC_Os11g18940
Os.8397.1.S1_at--466--51Chr11:10756023..10756047 (25 bp)
ATTGATACGGGTTCTGATGTCCAGA
LOC_Os11g18940
Target Sequence 
TCGTTGGGACCAATGGTGGCCGTCCCGTGCGTCAACTGCCACCTCCTCGTCATGCTCTGCAAGTCCTCGCCGGCGTGCCC
CAACTGCAAGTTCGTGCAGCCGTCGGTGCCGGCGCCGGCCATGCCGCGGACGCCGCCGCGTCGCCGGCTGGAGGCCACCG
TCAAGCCGCTGGAGACGCTCAGCCTTCTGCACTAAAGCAAATTAAGAAAGATGACAGTAGAAAATGCGGGGGAGAGAGTG
ACAGACAGCAAGTGAAAGCAGCTACAAATGTGTTAATTACTACTCAGCAGTAGTGATGATAGATGAGCTAGATTATGGGT
GGGGTGTGCTGTGTGTGTGGATCAATTTACTGTATGAGTGCTGCACATGCTACATTGCTTCAATGCAAATGAGGCGATCA
AGTAGTAAATGGGATTAATTAAGCGTACTTCCCCTGCTCCCATTAAAAAACAAATCGAGGATGGTGATGCTCCCCTGCAC
CATCATAAAGTCCCATCACTCAAAATTGATACGGGTTCTGATGTCCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8397.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis