Browse Element(s) Details


OsAffx.18933.1.S1_at

Description tigr:9639.m01755
TID=OsAffx.18933.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1893011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g18880Os.27600.1.S1_at11/1111+10716178..10725406UBX domain containing protein, expressed
LOC_Os11g18890OsAffx.31050.1.S1_at11/1111+10725696..10727784hypothetical protein
LOC_Os11g18900OsAffx.7150.1.S1_at11/1111+10729372..10731900hypothetical protein
LOC_Os11g18910NANA11+10732422..10733606retrotransposon, putative, centromere-specific
LOC_Os11g18919OsAffx.18932.1.S1_at11/1111+10736017..10737106hypothetical protein
LOC_Os11g18930OsAffx.18933.1.S1_at11/1111+10742991..10743376expressed protein
LOC_Os11g18940Os.8397.1.S1_at11/1111+10754381..10756057WW domain containing protein, expressed
LOC_Os11g18947Os.21166.1.A1_at11/1111+10764536..10769596Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18933.1.S1_at--476--9451Chr11:10743321..10743345 (25 bp)
TCGGCAGCTCCATTGCCATTGTTCA
LOC_Os11g18930
OsAffx.18933.1.S1_at--8--4331Chr11:10743306..10743330 (25 bp)
CCATTGTTCAGCTCAGACCGTTTGA
LOC_Os11g18930
OsAffx.18933.1.S1_at--621--4831Chr11:10743296..10743320 (25 bp)
GCTCAGACCGTTTGATCTCGTCAAA
LOC_Os11g18930
OsAffx.18933.1.S1_at--984--1671Chr11:10743272..10743296 (25 bp)
AGCCTCAAAAATAACTCCTCTGCAA
LOC_Os11g18930
OsAffx.18933.1.S1_at--598--7451Chr11:10743226..10743250 (25 bp)
GTGTGCATTCCGAAATGGTTAGCTA
LOC_Os11g18930
OsAffx.18933.1.S1_at--223--2971Chr11:10743213..10743237 (25 bp)
AATGGTTAGCTAGCTTTGCGCGCGA
LOC_Os11g18930
OsAffx.18933.1.S1_at--94--1571Chr11:10743202..10743226 (25 bp)
AGCTTTGCGCGCGATCTTGAATTAT
LOC_Os11g18930
OsAffx.18933.1.S1_at--142--9011Chr11:10743186..10743209 (24 bp)
TGAATTATCTGGTGCTTACGGCCGT
LOC_Os11g18930
OsAffx.18933.1.S1_at--641--9071Chr11:10743093..10743197 (25 bp)
TGCTTACGGCCGTGCGCACTGTAGG
LOC_Os11g18930
OsAffx.18933.1.S1_at--279--1511Chr11:10743040..10743064 (25 bp)
AGCAGCGATCTGGAAGACAAGCAAT
LOC_Os11g18930
OsAffx.18933.1.S1_at--1069--1471Chr11:10743021..10743045 (25 bp)
AGCAATCGCAGCAGCGACGTTAGAA
LOC_Os11g18930
Target Sequence 
TCGGCAGCTCCATTGCCATTGTTCAGCTCAGACCGTTTGATCTCGTCAAAGCCTCAAAAATAACTCCTCTGCAAAAATCA
AAAGGATACATGCATGTGTGCATTCCGAAATGGTTAGCTAGCTTTGCGCGCGATCTTGAATTATCTGGTGCTTACGGCCG
TGCGCACTGTAGGGAAAGAAGGCGATGTCGGTGCAGCGACAAGCAGCGATCTGGAAGACAAGCAATCGCAGCAGCGACGT
TAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18933.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis