Browse Element(s) Details


Os.27600.1.S1_at

Description gb:AK067658.1
DB_XREF= gi:32977676
TID=Os.27600.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.27600 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023106G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013114I10, full insert sequence.
FL= gb:AK067658.1 gb:AK071663.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1888011/11UBX domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g18860OsAffx.18930.1.S1_x_at11/1111+10696126..10696494hypothetical protein
LOC_Os11g18860OsAffx.18930.1.S1_at11/1111+10696126..10696494hypothetical protein
LOC_Os11g18870OsAffx.31049.1.S1_at11/1111+10710790..10713041FLOWERING LOCUS T protein, putative
LOC_Os11g18880Os.27600.1.S1_at11/1111+10716178..10725406UBX domain containing protein, expressed
LOC_Os11g18890OsAffx.31050.1.S1_at11/1111+10725696..10727784hypothetical protein
LOC_Os11g18900OsAffx.7150.1.S1_at11/1111+10729372..10731900hypothetical protein
LOC_Os11g18910NANA11+10732422..10733606retrotransposon, putative, centromere-specific
LOC_Os11g18919OsAffx.18932.1.S1_at11/1111+10736017..10737106hypothetical protein
LOC_Os11g18930OsAffx.18933.1.S1_at11/1111+10742991..10743376expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27600.1.S1_at--10--9451Chr11:10717045..10717069 (25 bp)
TCGGTTATCTGAGAACTGCCCTATC
LOC_Os11g18880
Os.27600.1.S1_at--341--9171Chr11:10717029..10717053 (25 bp)
TGCCCTATCGTTTGTGAATCCACTG
LOC_Os11g18880
Os.27600.1.S1_at--624--3031Chr11:10717013..10717037 (25 bp)
AATCCACTGTCCTACTTGAGAGCAA
LOC_Os11g18880
Os.27600.1.S1_at--57--2291Chr11:10716990..10717014 (25 bp)
AAATGCTGCTCCATCAAACCCTGAT
LOC_Os11g18880
Os.27600.1.S1_at--938--9851Chr11:10716809..10716829 (21 bp)
TACAGACCGAGCACTGGACCCTGGA
LOC_Os11g18880
Os.27600.1.S1_at--423--5811Chr11:10716793..10716817 (25 bp)
GACCCTGGAATCGTCCTGGAGAGGA
LOC_Os11g18880
Os.27600.1.S1_at--499--4271Chr11:10716779..10716803 (25 bp)
CCTGGAGAGGACACTGCTTCGGAAA
LOC_Os11g18880
Os.27600.1.S1_at--961--271Chr11:10716742..10716766 (25 bp)
ATAGTGCGAGGCAACAGGCTGCTAG
LOC_Os11g18880
Os.27600.1.S1_at--12--3711Chr11:10716721..10716745 (25 bp)
CTAGGGATACTAGCTCCGGGAGCAC
LOC_Os11g18880
Os.27600.1.S1_at--262--8831Chr11:10716409..10716433 (25 bp)
TGATTGGCTGTGATGGTTCGTTTCC
LOC_Os11g18880
Os.27600.1.S1_at--575--6571Chr11:10716377..10716401 (25 bp)
GATTCTTCGTCAGTTTGGGTAGTAT
LOC_Os11g18880
Target Sequence 
TCGGTTATCTGAGAACTGCCCTATCGTTTGTGAATCCACTGTCCTACTTGAGAGCAAATGCTGCTCCATCAAACCCTGAT
CAGTTGGCAAATCAGGGGTCGCCACAGTACAGACCGAGCACTGGACCCTGGAATCGTCCTGGAGAGGACACTGCTTCGGA
AAGCCGTATTCNTGATAGTGCGAGGCAACAGGCTGCTAGGGATACTAGCTCCGGGAGCACCTTGAGGAGGCGGCCGAGAC
AATTCGGTGGCAACGTTCNCAGTTTGAGAAGTGATGACCAAGGCCCATNTGATGATAGGAATGTTTNCTGGAACGGGAAT
TCTACAGAGTTCGGAGGCGAAGATAAGAAATGAGAGCTGAGCNCCGGCAATATCATGGCAGAGTTAAATATATACTTGGA
CAAATANCACGATCTAGGTAAATAAATACAAACAAATTTGAGATGTTAAATTCAGTGGTACCAGTACCACAACATAGACN
NNTAGTGTAAAATGATAATACATNTGATGATTGGCTGTGATGGTTCGTTTCCGGGAGNNGATTCTTCGTCAGTTTGGGTA
GTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27600.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis