Browse Element(s) Details


OsAffx.18930.1.S1_at

Description tigr:9639.m01745
TID=OsAffx.18930.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1886011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g18830Os.31252.1.S1_at11/1111+10669808..10676186Survival motor neuron containing protein, expressed
LOC_Os11g18839NANA11+10680275..10680385NA
LOC_Os11g18850OsAffx.18929.1.S1_at11/1111+10682887..10683153hypothetical protein
LOC_Os11g18860OsAffx.18930.1.S1_x_at11/1111+10696126..10696494hypothetical protein
LOC_Os11g18860OsAffx.18930.1.S1_at11/1111+10696126..10696494hypothetical protein
LOC_Os11g18870OsAffx.31049.1.S1_at11/1111+10710790..10713041FLOWERING LOCUS T protein, putative
LOC_Os11g18880Os.27600.1.S1_at11/1111+10716178..10725406UBX domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18930.1.S1_at--799--1491Chr11:10696407..10696431 (25 bp)
AGCACGGCGGCGAGTAGAGAGGCGA
LOC_Os11g18860
OsAffx.18930.1.S1_at--267--9411Chr11:10696346..10696370 (25 bp)
TCGTCATGTGCTTGGCTCCGTCAAG
LOC_Os11g18860
OsAffx.18930.1.S1_at--848--771Chr11:10696341..10696365 (25 bp)
ATGTGCTTGGCTCCGTCAAGGCAAG
LOC_Os11g18860
OsAffx.18930.1.S1_at--1090--4911Chr11:10696337..10696361 (25 bp)
GCTTGGCTCCGTCAAGGCAAGGCAA
LOC_Os11g18860
OsAffx.18930.1.S1_at--570--10851Chr11:10696335..10696359 (25 bp)
TTGGCTCCGTCAAGGCAAGGCAAGG
LOC_Os11g18860
OsAffx.18930.1.S1_at--590--3211Chr11:10696315..10696339 (25 bp)
CAAGGCAGCGGATGTCGTGCGCTCT
LOC_Os11g18860
OsAffx.18930.1.S1_at--374--1631Chr11:10696309..10696333 (25 bp)
AGCGGATGTCGTGCGCTCTGACAAG
LOC_Os11g18860
OsAffx.18930.1.S1_at--699--6271Chr11:10696305..10696329 (25 bp)
GATGTCGTGCGCTCTGACAAGGCAA
LOC_Os11g18860
OsAffx.18930.1.S1_at--207--4011Chr11:10696300..10696324 (25 bp)
CGTGCGCTCTGACAAGGCAAGGCAA
LOC_Os11g18860
OsAffx.18930.1.S1_at--371--3211Chr11:10696268..10696292 (25 bp)
CAAGGCTCTGTCGTGCGCTCGTCGT
LOC_Os11g18860
OsAffx.18930.1.S1_at--628--3811Chr11:10696242..10696266 (25 bp)
CTCCTCCTGGTCGTCACGAGCATCG
LOC_Os11g18860
Target Sequence 
AGCACGGCGGCGAGTAGAGAGGCGACGGCGGCCAGGCTTCCCCTCCTCTTAGTCGTCGTCCTCGTCATGTGCTTGGCTCC
GTCAAGGCAAGGCAAGGCAGCGGATGTCGTGCGCTCTGACAAGGCAAGGCAAGGCAAGGCAAGGCTCTGTCGTGCGCTCG
TCGTCCTCCTCCTGGTCGTCACGAGCATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18930.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis