Browse Element(s) Details


OsAffx.31049.1.S1_at

Description tigr:9639.m01747
TID=OsAffx.31049.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Phosphatidylethanolamine-binding protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1887011/11FLOWERING LOCUS T protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g18860OsAffx.18930.1.S1_x_at11/1111+10696126..10696494hypothetical protein
LOC_Os11g18860OsAffx.18930.1.S1_at11/1111+10696126..10696494hypothetical protein
LOC_Os11g18870OsAffx.31049.1.S1_at11/1111+10710790..10713041FLOWERING LOCUS T protein, putative
LOC_Os11g18880Os.27600.1.S1_at11/1111+10716178..10725406UBX domain containing protein, expressed
LOC_Os11g18890OsAffx.31050.1.S1_at11/1111+10725696..10727784hypothetical protein
LOC_Os11g18900OsAffx.7150.1.S1_at11/1111+10729372..10731900hypothetical protein
LOC_Os11g18910NANA11+10732422..10733606retrotransposon, putative, centromere-specific
LOC_Os11g18919OsAffx.18932.1.S1_at11/1111+10736017..10737106hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009744biological_processresponse to sucrose stimulus
GO:0009910biological_processnegative regulation of flower development
GO:0009911biological_processpositive regulation of flower development
GO:0005515molecular_functionprotein binding
GO:0008429molecular_functionphosphatidylethanolamine binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31049.1.S1_at--485--8371Chr11:10710826..10710850 (25 bp)
GGCGATATCGTGGACCCGTTCGTCA
LOC_Os11g18870
OsAffx.31049.1.S1_at--56--3651Chr11:10710857..10710881 (25 bp)
CTTCGCTTAGGGTCTTCTACAACAG
LOC_Os11g18870
OsAffx.31049.1.S1_at--878--2651Chr11:10710910..10710934 (25 bp)
AAGCCATCTCAGGTGTTGAACCAAC
LOC_Os11g18870
OsAffx.31049.1.S1_at--382--711Chr11:10710961..10710985 (25 bp)
ATGAGGACGCTCTACACGCTTGTAA
LOC_Os11g18870
OsAffx.31049.1.S1_at--728--10671Chr11:10711925..10711949 (25 bp)
TTCCAGAGACCACTGATGCCAGATT
LOC_Os11g18870
OsAffx.31049.1.S1_at--985--8891Chr11:10712441..10712465 (25 bp)
TGAGATTGTCCCCTATGAGAGCCCA
LOC_Os11g18870
OsAffx.31049.1.S1_at--483--531Chr11:10712485..10712509 (25 bp)
ATCGCTTCGTGTTCATCCTATTCAG
LOC_Os11g18870
OsAffx.31049.1.S1_at--648--9251Chr11:10712500..10712524 (25 bp)
TCCTATTCAGGCAGTCAGTCAGGCA
LOC_Os11g18870
OsAffx.31049.1.S1_at--313--931Chr11:10712520..10712544 (25 bp)
AGGCAGACCACCTATGCACCAGGGT
LOC_Os11g18870
OsAffx.31049.1.S1_at--930--7711Chr11:10712541..10712565 (25 bp)
GGGTGGCGCCAAAACTTCAATACAA
LOC_Os11g18870
OsAffx.31049.1.S1_at--1010--3171Chr11:10712558..10712582 (25 bp)
CAATACAAGGGACTTTGCTGAGCTC
LOC_Os11g18870
Target Sequence 
GGCGATATCGTGGACCCGTTCGTCACCACCGCTTCGCTTAGGGTCTTCTACAACAGCAAGGAGATGACAAATGGGTCTGA
GCTCAAGCCATCTCAGGTGTTGAACCAACCAAGGATTTATATCGAAGGTCGCGACATGAGGACGCTCTACACGCTTGTAA
TGGTGGACCCTGATGCACCAAGCCCCAGCAACCCTACTAAAAGAGAGTACCTTCATTGGATGGTGACAGACATTCCAGAG
ACCACTGATGCCAGATTTGGTAATGAGATTGTCCCCTATGAGAGCCCACGCCCAACTGCAGGCATCCATCGCTTCGTGTT
CATCCTATTCAGGCAGTCAGTCAGGCAGACCACCTATGCACCAGGGTGGCGCCAAAACTTCAATACAAGGGACTTTGCTG
AGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31049.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis