Browse Element(s) Details


OsAffx.18929.1.S1_at

Description tigr:9639.m01744
TID=OsAffx.18929.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1885011/11hypothetical protein
LOC_Os04g184501/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g18820OsAffx.18928.1.S1_at11/1111+10657001..10660190hypothetical protein
LOC_Os11g18830Os.31252.1.S1_at11/1111+10669808..10676186Survival motor neuron containing protein, expressed
LOC_Os11g18839NANA11+10680275..10680385NA
LOC_Os11g18850OsAffx.18929.1.S1_at11/1111+10682887..10683153hypothetical protein
LOC_Os11g18860OsAffx.18930.1.S1_x_at11/1111+10696126..10696494hypothetical protein
LOC_Os11g18860OsAffx.18930.1.S1_at11/1111+10696126..10696494hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18929.1.S1_at--688--911Chr11:10683113..10683137 (25 bp)
AGGAACAACAATATTGGCTCGAGGG
LOC_Os11g18850
OsAffx.18929.1.S1_at--251--8236Chr10:11911851..11911875 (25 bp)
GGCAAGCGCATCAGTTTCAGCATGG
NONE
OsAffx.18929.1.S1_at--310--3254Chr10:11911853..11911877 (25 bp)
CAAGCGCATCAGTTTCAGCATGGTG
NONE
OsAffx.18929.1.S1_at--1111--86111Chr10:11911873..11911897 (25 bp)
TGGTGGAGCACATCAGTATCGGCTC
NONE
OsAffx.18929.1.S1_at--297--51112Chr12:5946956..5946980 (25 bp)
GCACATCAGTATCGGCTCATGAAAG
NONE
OsAffx.18929.1.S1_at--667--12314Chr11:20619936..20619955 (20 bp)
AGATTGGTTTTGGAGTTATCAAGAC
NONE
OsAffx.18929.1.S1_at--263--2751Chr11:10682989..10683013 (25 bp)
AAGAAATTTTGAAGCAGGCGTGCCA
LOC_Os11g18850
OsAffx.18929.1.S1_at--373--3131Chr11:10682985..10683009 (25 bp)
AATTTTGAAGCAGGCGTGCCAATTT
LOC_Os11g18850
OsAffx.18929.1.S1_at--1045--3031Chr11:10682947..10682971 (25 bp)
AATCGAATACACTGGCTTGGGAGAG
LOC_Os11g18850
OsAffx.18929.1.S1_at--1014--331Chr11:10682941..10682965 (25 bp)
ATACACTGGCTTGGGAGAGCTGCTT
LOC_Os11g18850
OsAffx.18929.1.S1_at--83--10851Chr11:10682931..10682955 (25 bp)
TTGGGAGAGCTGCTTAGCTCCTATG
LOC_Os11g18850
Target Sequence 
AGGAACAACAATATTGGCTCGAGGGGCAAGCGCATCAGTTTCAGCATGGTGGAGCACATCAGTATCGGCTCATGAAAGCC
GATTGCAAGAAGCAAAGGAAGATTGGTTTTGGAGTTATCAAGACAAGAAATTTTGAAGCAGGCGTGCCAATTTGTTTTGA
GGAAAAAATCGAATACACTGGCTTGGGAGAGCTGCTTAGCTCCTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18929.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis