Browse Element(s) Details


OsAffx.18928.1.S1_at

Description tigr:9639.m01741
TID=OsAffx.18928.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1882011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g18770OsAffx.31047.1.S1_at10/1111+10626230..10635123PHD-finger family protein, expressed
LOC_Os11g18780OsAffx.20736.1.S1_at2/1111+10636453..10640667hypothetical protein
LOC_Os11g18780Os.27520.8.S1_x_at1/1111+10636453..10640667hypothetical protein
LOC_Os11g18780OsAffx.16528.1.S1_at1/1111+10636453..10640667hypothetical protein
LOC_Os11g18790OsAffx.10632.1.S1_at1/1111+10641446..10646562transposon protein, putative, unclassified
LOC_Os11g18790OsAffx.31760.1.S1_at1/1111+10641446..10646562transposon protein, putative, unclassified
LOC_Os11g18800NANA11+10648157..10649209hypothetical protein
LOC_Os11g18810OsAffx.30435.1.S1_at1/1111+10649884..10656614retrotransposon protein, putative, unclassified
LOC_Os11g18810OsAffx.22699.1.S1_x_at1/1111+10649884..10656614retrotransposon protein, putative, unclassified
LOC_Os11g18810OsAffx.18375.1.S1_at1/1111+10649884..10656614retrotransposon protein, putative, unclassified
LOC_Os11g18810OsAffx.16111.1.S1_at1/1111+10649884..10656614retrotransposon protein, putative, unclassified
LOC_Os11g18820OsAffx.18928.1.S1_at11/1111+10657001..10660190hypothetical protein
LOC_Os11g18830Os.31252.1.S1_at11/1111+10669808..10676186Survival motor neuron containing protein, expressed
LOC_Os11g18839NANA11+10680275..10680385NA
LOC_Os11g18850OsAffx.18929.1.S1_at11/1111+10682887..10683153hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18928.1.S1_at--1115--5371Chr11:10657776..10657800 (25 bp)
GAAGAAGCAGTAGCACCAATCCCTG
LOC_Os11g18820
OsAffx.18928.1.S1_at--1091--9231Chr11:10657642..10657666 (25 bp)
TCCTTCGACATCAAACAGTTTCTAG
LOC_Os11g18820
OsAffx.18928.1.S1_at--1118--2831Chr11:10657564..10657588 (25 bp)
AAGTCAATCCTCTTAGACATCTCAA
LOC_Os11g18820
OsAffx.18928.1.S1_at--505--9511Chr11:10657543..10657567 (25 bp)
TCAAAAAGACTCGAAGGTTCCCTAG
LOC_Os11g18820
OsAffx.18928.1.S1_at--315--7891Chr11:10657528..10657552 (25 bp)
GGTTCCCTAGAGACTTTGGTGACAA
LOC_Os11g18820
OsAffx.18928.1.S1_at--52--1471Chr11:10657357..10657381 (25 bp)
AGAAGGGACCTAGAGGCCACCATAC
LOC_Os11g18820
OsAffx.18928.1.S1_at--1004--331Chr11:10657204..10657360 (25 bp)
ATACACGCCAACAAGATTGCCATTG
LOC_Os11g18820
OsAffx.18928.1.S1_at--884--8271Chr11:10657121..10657145 (25 bp)
GGCATCTGCCAAGCACTTGGCCGAA
LOC_Os11g18820
OsAffx.18928.1.S1_at--1125--3571Chr11:10657106..10657130 (25 bp)
CTTGGCCGAACTAACCAAGTCTTTG
LOC_Os11g18820
OsAffx.18928.1.S1_at--436--10751Chr11:10657084..10657108 (25 bp)
TTGAAGCCGATTTCCAGCTCTGATG
LOC_Os11g18820
OsAffx.18928.1.S1_at--178--211Chr11:10657075..10657099 (25 bp)
ATTTCCAGCTCTGATGCAGCCGATG
LOC_Os11g18820
Target Sequence 
GAAGAAGCAGTAGCACCAATCCCTGCTATCCCTGTTCTAGCTGATATGTTCTCCTTCGACATCAAACAGTTTCTAGATGA
AGAGGAAGAAACAACAAGCCAGGCTCTGGTGCCCCTAGCCGATGACCTCAAGTCAATCCTCTTAGACATCTCAAAAAGAC
TCGAAGGTTCCCTAGAGACTTTGGTGACAAGTTGTGGATCCATCCGGGATAGATTCAACGAGATCCATGACAAAATCCCA
GATGAACTAGCCGATGTTCTTACTCCAGCAGTTTACCTTGAACAACACCGGTTCAAACTGGAAAAGGCTAAAAAGAGAAT
GGCCGATCGTCACGAAAGAAGGGACCTAGAGGCCACCATACACGCCAACAAGATTGCCATTGAGCAGAAAAAACTTGAAG
ACTTGCCAAAAACTATTGAAGATCAAAAGTCAAAGTTGAAGGCATCTGCCAAGCACTTGGCCGAACTAACCAAGTCTTTG
AAGCCGATTTCCAGCTCTGATGCAGCCGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18928.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis