Browse Element(s) Details


Os.50441.2.S1_x_at

Description gb:AK121206.1
DB_XREF= gi:37990829
TID=Os.50441.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50441 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023003H24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023088A16, full insert sequence.
FL= gb:AK121206.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3530011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35280OsAffx.10496.1.S1_at2/112+21197459..21199776retrotransposon protein, putative, unclassified
LOC_Os02g35290OsAffx.22722.1.S1_x_at1/112+21200570..21205947retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g35300Os.50441.1.S1_at11/112+21219175..21222839transposon protein, putative, unclassified, expressed
LOC_Os02g35300Os.50441.2.S1_x_at11/112+21219175..21222839transposon protein, putative, unclassified, expressed
LOC_Os02g35310Os.48606.1.S1_at11/112+21223097..2122548212-oxophytodienoate reductase 1, putative, expressed
LOC_Os02g35320OsAffx.12359.1.S1_at9/112+21237383..21240741FAD binding domain containing protein, expressed
LOC_Os02g35329Os.3710.1.S1_at10/112+21244258..21245455E3 ubiquitin ligase EL5, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50441.2.S1_x_at--1110--3491Chr02:21222240..21222264 (25 bp)
CATGGAGGACATGCTCCGGGAGCAC
LOC_Os02g35300
Os.50441.2.S1_x_at--77--6011Chr02:21222310..21222334 (25 bp)
GAGAGGACGAATCACCACGGCAACA
LOC_Os02g35300
Os.50441.2.S1_x_at--916--5052Chr02:21222335..21222356 (22 bp)
GCAGCAGCAGTAACAACAACAGATT
LOC_Os02g35300
Os.50441.2.S1_x_at--791--9011Chr02:21222518..21222542 (25 bp)
TGCAATGCAGGGAGATGATCTTCAT
LOC_Os02g35300
Os.50441.2.S1_x_at--804--5831Chr02:21222565..21222589 (25 bp)
GACCTGATGAGGTGAAGATCTCTGA
LOC_Os02g35300
Os.50441.2.S1_x_at--447--7591Chr02:21222671..21222695 (25 bp)
GGGCTTTTCTTGATCCATGTGTATA
LOC_Os02g35300
Os.50441.2.S1_x_at--562--291Chr02:21222697..21222721 (25 bp)
ATAGCACACTGTTAGAGAGGGTTTT
LOC_Os02g35300
Os.50441.2.S1_x_at--351--2851Chr02:21222725..21222749 (25 bp)
AAGTCTGATGAGGAGGAACAAGCCC
LOC_Os02g35300
Os.50441.2.S1_x_at--299--5511Chr02:21222740..21222764 (25 bp)
GAACAAGCCCTGTAAAAACACGGAT
LOC_Os02g35300
Os.50441.2.S1_x_at--283--5531Chr02:21222781..21222805 (25 bp)
GAAAACTGTGTATATCTTGCTGATC
LOC_Os02g35300
Os.50441.2.S1_x_at--359--6331Chr02:21222811..21222835 (25 bp)
GATGCAACAGACTTCAATGACCTAG
LOC_Os02g35300
Target Sequence 
CATGGAGGACATGCTCCGGGAGCACGAGCGGCAGATCCAGCAGGCGGTGCGCAAGGCGCGGGTCGACAAGGAGAGGACGA
ATCACCACGGCAACAGCAGCAGCAGTAACAACAACAGATTGCAATGCAATGCAGGGAGATGATCTTCATGGATGGAGGAG
AGTAGAAAGAAGACCTGATGAGGTGAAGATCTCTGATGGAGGGTGCAGGCAGGCAGACGGCGACAGCGACGGCGGCGCGG
AACTCGGGGTATAGATATCTGCAATTGAAGAGCTGGGGGGCTTTTCTTGATCCATGTGTATAAATAGCACACTGTTAGAG
AGGGTTTTGGGAAGTCTGATGAGGAGGAACAAGCCCTGTAAAAACACGGATTGTAAAAGGCCAAATGGAAAACTGTGTAT
ATCTTGCTGATCGAAGTGATGCAACAGACTTCAATGACCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50441.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis