Browse Element(s) Details


Os.48606.1.S1_at

Description gb:AK069898.1
DB_XREF= gi:32979922
TID=Os.48606.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.48606 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023036E18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023036E18, full insert sequence.
FL= gb:AK069898.1 gb:AK059887.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3531011/1112-oxophytodienoate reductase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35280OsAffx.10496.1.S1_at2/112+21197459..21199776retrotransposon protein, putative, unclassified
LOC_Os02g35290OsAffx.22722.1.S1_x_at1/112+21200570..21205947retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g35300Os.50441.1.S1_at11/112+21219175..21222839transposon protein, putative, unclassified, expressed
LOC_Os02g35300Os.50441.2.S1_x_at11/112+21219175..21222839transposon protein, putative, unclassified, expressed
LOC_Os02g35310Os.48606.1.S1_at11/112+21223097..2122548212-oxophytodienoate reductase 1, putative, expressed
LOC_Os02g35320OsAffx.12359.1.S1_at9/112+21237383..21240741FAD binding domain containing protein, expressed
LOC_Os02g35329Os.3710.1.S1_at10/112+21244258..21245455E3 ubiquitin ligase EL5, putative, expressed
LOC_Os02g35338OsAffx.12359.1.S1_at9/112+21247879..21249767monooxygenase, putative
LOC_Os02g35338Os.51501.1.S2_x_at1/112+21247879..21249767monooxygenase, putative
LOC_Os02g35338Os.51501.1.S2_at1/112+21247879..21249767monooxygenase, putative

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009695biological_processjasmonic acid biosynthesis
GO:0010150biological_processleaf senescence
GO:0010193biological_processresponse to ozone
GO:0016629molecular_function12-oxophytodienoate reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48606.1.S1_at--346--6691Chr02:21223644..21223668 (25 bp)
GTTGCCGCTTTGCTCTAGAGGTAAT
LOC_Os02g35310
Os.48606.1.S1_at--427--2391Chr02:21223559..21223583 (25 bp)
AAACTGCCTGGACTGTTGGGACTCA
LOC_Os02g35310
Os.48606.1.S1_at--617--7631Chr02:21223542..21223566 (25 bp)
GGGACTCAGACCCAGATGCACTTGG
LOC_Os02g35310
Os.48606.1.S1_at--229--1491Chr02:21223495..21223519 (25 bp)
AGCAAGCTGGGCGTTCTCTACTGCA
LOC_Os02g35310
Os.48606.1.S1_at--627--7771Chr02:21223433..21223457 (25 bp)
GGTGCAGATTCCTTACAAGCTATGG
LOC_Os02g35310
Os.48606.1.S1_at--659--1111Chr02:21223397..21223421 (25 bp)
AGTGTTTGCTGGCACTTTCATCGTC
LOC_Os02g35310
Os.48606.1.S1_at--1149--811Chr02:21223298..21223322 (25 bp)
ATGGTTCTTGGCAAACCCGGATCTG
LOC_Os02g35310
Os.48606.1.S1_at--452--6851Chr02:21223265..21223289 (25 bp)
GTTTGAGCTGAATGCGCCTCTGAAC
LOC_Os02g35310
Os.48606.1.S1_at--452--1891Chr02:21223225..21223249 (25 bp)
ACGTTCTACACTTCTGATCCAGTTA
LOC_Os02g35310
Os.48606.1.S1_at--164--2251Chr02:21223135..21223159 (25 bp)
AAATTGCAATCCATTCCTCAGAGCT
LOC_Os02g35310
Os.48606.1.S1_at--850--9651Chr02:21223118..21223142 (25 bp)
TCAGAGCTCTTGACTTGGAATCACA
LOC_Os02g35310
Target Sequence 
GTTGCCGCTTTGCTCTAGAGGTAATCCAAGCAGCCATCGNTGAGATCGGATCGNACAGAGTAGGTGTCCGTCTCTCGCCA
TACTCAAACTGCCTGGACTGTTGGGACTCAGACCCAGATGCACTTGGCCTCTACATGATCCAAGCCATGAGCAAGCTGGG
CGTTCTCTACTGCAGCATGGTTGAGCCTGAGNTGGTCAAAGTAGACGGCAAGGTGCAGATTCCTTACAAGCTATGGCACT
TCAGGAAAGTGTTTGCTGGCACTTTCATCGTCGCTGGAGGATACAACAGAGAAGAAGGCAATAGAGCAGTGTCTCAGGGT
TACACAGACCTGGTAGCATATGGTAAATGGTTCTTGGCAAACCCGGATCTGCCTAGGCGGTTTGAGCTGAATGCGCCTCT
GAACAAGTATGACAGATCGACGTTCTACACTTCTGATCCAGTTATCGGGTACACNGATNACCCTTTTCTCAGTCCTCTGT
GAGTATTGCATTTGNTTTAATTAAGCGAGAAATTGCAATCCATTCCTCAGAGCTCTTGACTTGGAATCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48606.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis