Browse Element(s) Details


Os.51501.1.S2_at

Description gb:AK070768.1
DB_XREF= gi:32980791
TID=Os.51501.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51501 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023073F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023073F09, full insert sequence.
FL= gb:AK070768.1 gb:AK062962.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g353741/11monooxygenase, putative
LOC_Os02g353561/11monooxygenase, putative
LOC_Os02g354201/11monooxygenase, putative
LOC_Os02g353921/11monooxygenase, putative
LOC_Os02g353381/11monooxygenase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35329Os.3710.1.S1_at10/112+21244258..21245455E3 ubiquitin ligase EL5, putative, expressed
LOC_Os02g35338OsAffx.12359.1.S1_at9/112+21247879..21249767monooxygenase, putative
LOC_Os02g35338Os.51501.1.S2_x_at1/112+21247879..21249767monooxygenase, putative
LOC_Os02g35338Os.51501.1.S2_at1/112+21247879..21249767monooxygenase, putative
LOC_Os02g35347Os.3710.1.S1_at4/112+21253494..21254438Zinc finger, C3HC4 type family protein
LOC_Os02g35356OsAffx.12359.1.S1_at9/112+21256905..21258793monooxygenase, putative
LOC_Os02g35356Os.51501.1.S2_x_at1/112+21256905..21258793monooxygenase, putative
LOC_Os02g35356Os.51501.1.S2_at1/112+21256905..21258793monooxygenase, putative
LOC_Os02g35365Os.3710.1.S1_at4/112+21262520..21263464Zinc finger, C3HC4 type family protein
LOC_Os02g35374OsAffx.12359.1.S1_at9/112+21265931..21267819monooxygenase, putative
LOC_Os02g35374Os.51501.1.S2_at1/112+21265931..21267819monooxygenase, putative
LOC_Os02g35374Os.51501.1.S2_x_at1/112+21265931..21267819monooxygenase, putative
LOC_Os02g35383Os.3710.1.S1_at4/112+21271546..21272490Zinc finger, C3HC4 type family protein
LOC_Os02g35392OsAffx.12359.1.S1_at9/112+21274957..21276845monooxygenase, putative
LOC_Os02g35392Os.51501.1.S2_x_at1/112+21274957..21276845monooxygenase, putative
LOC_Os02g35392Os.51501.1.S2_at1/112+21274957..21276845monooxygenase, putative
LOC_Os02g35401Os.3710.1.S1_at4/112+21280572..21281516Zinc finger, C3HC4 type family protein
LOC_Os02g35420OsAffx.12359.1.S1_at9/112+21283983..21285873monooxygenase, putative
LOC_Os02g35420Os.51501.1.S2_at1/112+21283983..21285873monooxygenase, putative
LOC_Os02g35420Os.51501.1.S2_x_at1/112+21283983..21285873monooxygenase, putative
LOC_Os02g35429Os.3710.1.S1_at4/112+21289599..21290543Zinc finger, C3HC4 type family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004497molecular_functionmonooxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51501.1.S2_at--1119--94311Chr11:15505149..15505173 (25 bp)
TCGGCAGATTTAGTCGAAGGCCTCA
NONE
Os.51501.1.S2_at--972--3439Chr11:15505153..15505177 (25 bp)
CAGATTTAGTCGAAGGCCTCATGCT
NONE
Os.51501.1.S2_at--1015--6531Chr11:15505155..15505179 (25 bp)
GATTTAGTCGAAGGCCTCATGCTAT
NONE
Os.51501.1.S2_at--923--9071Chr11:15505174..15505198 (25 bp)
TGCTATCCGCCAACACATGGTTTCC
NONE
Os.51501.1.S2_at--501--4871Chr11:15505175..15505199 (25 bp)
GCTATCCGCCAACACATGGTTTCCA
NONE
Os.51501.1.S2_at--89--3691Chr11:15505351..15505375 (25 bp)
CTTTCCTCATTTAATGTTACAGAAT
NONE
Os.51501.1.S2_at--617--2514Chr11:15505506..15505530 (25 bp)
AACATAAATATTTTTTCGTCGCAAT
NONE
Os.51501.1.S2_at--317--10371Chr11:15505516..15505540 (25 bp)
TTTTTTCGTCGCAATATAGTCATGT
NONE
Os.51501.1.S2_at--132--10311Chr11:15505519..15505543 (25 bp)
TTTCGTCGCAATATAGTCATGTAAG
NONE
Os.51501.1.S2_at--664--72122Chr12:14235..14254 (20 bp)
GTCGCAATATAGTCATGTAAGATCT
NONE
Os.51501.1.S2_at--609--6811Chr11:15505594..15505618 (25 bp)
GTATATCGGACAAGTAATTTTGGAG
NONE
Target Sequence 
TCGGCAGATTTAGTCGAAGGCCTCATGCTATCCGCCAACACATGGTTTCCATAAACTCCACATCATCAAGAAACTAGTAC
TAGACACTACTCTTACAATGCAAATACCACTATTCCATACTTCAATTTAATGTTACTTATCTCACATGATGTCTTGGATG
TTGTGTCGGAACCATGTCTCATGCAAGACATGGTTTTCTTCTCTTTCCTCATTTAATGTTACAGAATTGACTAAAAACAA
TAATACAAATAATCAATTTAGAGCATTACGAATGTATAAGAAGTAACTTAGTCAAATCAAAAAGTAATTTATATATATGA
TAAAAGTAACTTACGTATATAATAAAAGTAATTTACAAACATAAATATTTTTTCGTCGCAATATAGTCATGTAAGATCTT
GTTGTAGAGATTTAATTGTAACGAACACAATGGTGTAATCGGATTGTATATCGGACAAGTAATTTTGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51501.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis