Browse Element(s) Details


OsAffx.12359.1.S1_at

Description tigr:9630.m03370
TID=OsAffx.12359.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=monooxygenase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g353569/11monooxygenase, putative
LOC_Os02g353929/11monooxygenase, putative
LOC_Os02g353749/11monooxygenase, putative
LOC_Os02g353389/11monooxygenase, putative
LOC_Os02g354209/11monooxygenase, putative
LOC_Os02g353209/11FAD binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35320OsAffx.12359.1.S1_at9/112+21237383..21240741FAD binding domain containing protein, expressed
LOC_Os02g35329Os.3710.1.S1_at10/112+21244258..21245455E3 ubiquitin ligase EL5, putative, expressed
LOC_Os02g35338OsAffx.12359.1.S1_at9/112+21247879..21249767monooxygenase, putative
LOC_Os02g35338Os.51501.1.S2_x_at1/112+21247879..21249767monooxygenase, putative
LOC_Os02g35338Os.51501.1.S2_at1/112+21247879..21249767monooxygenase, putative
LOC_Os02g35347Os.3710.1.S1_at4/112+21253494..21254438Zinc finger, C3HC4 type family protein
LOC_Os02g35356OsAffx.12359.1.S1_at9/112+21256905..21258793monooxygenase, putative
LOC_Os02g35356Os.51501.1.S2_x_at1/112+21256905..21258793monooxygenase, putative
LOC_Os02g35356Os.51501.1.S2_at1/112+21256905..21258793monooxygenase, putative
LOC_Os02g35365Os.3710.1.S1_at4/112+21262520..21263464Zinc finger, C3HC4 type family protein
LOC_Os02g35374OsAffx.12359.1.S1_at9/112+21265931..21267819monooxygenase, putative
LOC_Os02g35374Os.51501.1.S2_at1/112+21265931..21267819monooxygenase, putative
LOC_Os02g35374Os.51501.1.S2_x_at1/112+21265931..21267819monooxygenase, putative
LOC_Os02g35383Os.3710.1.S1_at4/112+21271546..21272490Zinc finger, C3HC4 type family protein
LOC_Os02g35392OsAffx.12359.1.S1_at9/112+21274957..21276845monooxygenase, putative
LOC_Os02g35392Os.51501.1.S2_x_at1/112+21274957..21276845monooxygenase, putative
LOC_Os02g35392Os.51501.1.S2_at1/112+21274957..21276845monooxygenase, putative
LOC_Os02g35401Os.3710.1.S1_at4/112+21280572..21281516Zinc finger, C3HC4 type family protein

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Gene Ontology Classification
GO idTypeName
GO:0004497molecular_functionmonooxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12359.1.S1_at--288--10396Chr02:21284721..21284745 (25 bp)
TTTTGCCGTCGGACGGGTGCCCATT
LOC_Os02g35420
OsAffx.12359.1.S1_at--809--5756Chr02:21284732..21284756 (25 bp)
GACGGGTGCCCATTAACGAAAATCT
LOC_Os02g35420
OsAffx.12359.1.S1_at--179--7716Chr02:21284735..21284759 (25 bp)
GGGTGCCCATTAACGAAAATCTGTT
LOC_Os02g35420
OsAffx.12359.1.S1_at--792--2276Chr02:21284751..21284775 (25 bp)
AAATCTGTTGCATTTCTTCGTAAGC
LOC_Os02g35420
OsAffx.12359.1.S1_at--50--196Chr02:21284762..21284786 (25 bp)
ATTTCTTCGTAAGCAGGAGTCCCTC
LOC_Os02g35420
OsAffx.12359.1.S1_at--1153--1496Chr02:21284773..21284792 (20 bp)
AGCAGGAGTCCCTCACCAGGACGTA
LOC_Os02g35420
OsAffx.12359.1.S1_at--486--8031NONE
GGAGTCCCTCACCAGGACGTACGGA
NONE
OsAffx.12359.1.S1_at--966--9291NONE
TCCCTCACCAGGACGTACGGACGTT
NONE
OsAffx.12359.1.S1_at--813--1836Chr02:21285365..21285389 (25 bp)
ACGCGGCGAGGAAGTACGTGCTGGA
LOC_Os02g35420
OsAffx.12359.1.S1_at--994--3996Chr02:21285446..21285470 (25 bp)
CGTCGAGCTGGACGCTGACGAAGGT
LOC_Os02g35420
OsAffx.12359.1.S1_at--390--4436Chr02:21285754..21285778 (25 bp)
GCCATCGGGACGTTGCTGACGACGA
LOC_Os02g35420
Target Sequence 
TTTTGCCGTCGGACGGGTGCCCATTAACGAAAATCTGTTGCATTTCTTCGTAAGCAGGAGTCCCTCACCAGGACGTACGG
ACGTTGATGAGGACGCGGCGAGGAAGTACGTGCTGGAGAAGGTCGACGAGCTCCCCGGCGAGGTCGCCGACATGGTGCGT
CGGTGCGACGCGGCGTCGAGCTGGACGCTGACGAAGGTGTGGTACCGGCCGCCGTGGCAGGTGGCGCTCGCCGGGTTCCG
GCGCGGCGCGGTGACGGTCGCCGGCGACGCGATGCACGCCATGGGGCCCTTCATCGGCCAGGGCGGCTCCGCGGGGCTGG
AGGACGCCGTCGTGCTCGCCCGCTCGCTGTCGTCGGCGGCGGCCGGCGATGGCCGGGCGCCGCCGCGTCAGCAGCTGCGC
GACGACGCCGTCGGCGCGGCGATAGACGAGTACGTCNCGGAGAGGCGGCGGAGGGCGACNACGCTGTGCCTGCACAGCTT
CGCCATCGGGACGTTGCTGACGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12359.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis