Browse Element(s) Details


Os.50489.1.S1_at

Description gb:AK121411.1
DB_XREF= gi:37991034
TID=Os.50489.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50489 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023132O19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023132O19, full insert sequence.
FL= gb:AK121411.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6748011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67450OsAffx.12450.2.S1_x_at11/111+39522538..39523821Lipase family protein
LOC_Os01g67459NANA1+39531454..39531706NA
LOC_Os01g67468NANA1+39533959..39534768NA
LOC_Os01g67480Os.50489.1.S1_at11/111+39538156..39543454Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g67480Os.12030.1.S1_at11/111+39538156..39543454Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g67490OsAffx.23959.2.S1_at11/111+39543428..39546305OTU-like cysteine protease family protein, expressed
LOC_Os01g67490Os.26271.1.A1_s_at11/111+39543428..39546305OTU-like cysteine protease family protein, expressed
LOC_Os01g67490Os.42585.1.S1_at10/111+39543428..39546305OTU-like cysteine protease family protein, expressed
LOC_Os01g67500Os.8271.1.S1_a_at11/111+39549117..39553422armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os01g67500Os.8271.1.S1_at11/111+39549117..39553422armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os01g67500Os.8271.2.S1_x_at7/111+39549117..39553422armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os01g67510Os.18205.1.S1_at10/111+39565700..39570792Protein recA, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50489.1.S1_at--91--4991Chr01:39542397..39542421 (25 bp)
GCATCGCTGAGAGGGTTAGTCATAA
LOC_Os01g67480
Os.50489.1.S1_at--47--211Chr01:39542421..39542445 (25 bp)
ATTTGGCAATTTTCCCTTCACCCAT
LOC_Os01g67480
Os.50489.1.S1_at--778--4311Chr01:39542435..39542459 (25 bp)
CCTTCACCCATCTTTGCATATGATA
LOC_Os01g67480
Os.50489.1.S1_at--844--3511Chr01:39542502..39542526 (25 bp)
CATGTTTTCTCTGTGCTGTTTTAGG
LOC_Os01g67480
Os.50489.1.S1_at--1063--5451Chr01:39542602..39542626 (25 bp)
GAACTGTTTGGGTCATTTCTACCAA
LOC_Os01g67480
Os.50489.1.S1_at--734--5431Chr01:39542629..39542653 (25 bp)
GAACCTGACAATTCTGAACCTGATT
LOC_Os01g67480
Os.50489.1.S1_at--471--1771Chr01:39542646..39542670 (25 bp)
ACCTGATTGGAGCTGTGCTTGTCCC
LOC_Os01g67480
Os.50489.1.S1_at--551--7311Chr01:39542660..39542684 (25 bp)
GTGCTTGTCCCTCGGTTATAAATCG
LOC_Os01g67480
Os.50489.1.S1_at--710--771Chr01:39542705..39542729 (25 bp)
ATGTGATATTTACTGGATTCTTCTC
LOC_Os01g67480
Os.50489.1.S1_at--639--1231Chr01:39542802..39542826 (25 bp)
AGTTGAGGTATGCTAGCTCCACTTC
LOC_Os01g67480
Os.50489.1.S1_at--969--4851Chr01:39542813..39542837 (25 bp)
GCTAGCTCCACTTCAGAAATCTCTT
LOC_Os01g67480
Target Sequence 
GCATCGCTGAGAGGGTTAGTCATAATTTGGCAATTTTCCCTTCACCCATCTTTGCATATGATATGATTATGATACGATCG
ATGTTGGATGCTGGTATGGAGATCTCATGTTTTCTCTGTGCTGTTTTAGGAGAGGAGAACGAGGATTAGCAAGAGGCTGA
AGAAGCTGCAGGATCTCGTGCCGAACATGGACAAGGTAACTCAATGAACTGTTTGGGTCATTTCTACCAATTGAACCTGA
CAATTCTGAACCTGATTGGAGCTGTGCTTGTCCCTCGGTTATAAATCGAAATTAGTTCAAAATGTTTGATGTGATATTTA
CTGGATTCTTCTCAAATATACAGCAAACGAATACATCAGACATGTTGGATATTGCTGTAACCTACATCAAGGAGCTTCAG
GGCCAAGTTGAGGTATGCTAGCTCCACTTCAGAAATCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50489.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis