Browse Element(s) Details


Os.50545.1.S1_at

Description gb:AK121727.1
DB_XREF= gi:37991350
TID=Os.50545.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50545 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033082C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033082C10, full insert sequence.
FL= gb:AK121727.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4434011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44290Os.52688.1.S1_at11/112+26791456..26793339PAP2 superfamily protein, expressed
LOC_Os02g44300Os.14380.1.S1_at11/112+26793804..26796449MSP domain containing protein, expressed
LOC_Os02g44300Os.14380.1.S1_s_at11/112+26793804..26796449MSP domain containing protein, expressed
LOC_Os02g44300Os.52680.1.S1_at11/112+26793804..26796449MSP domain containing protein, expressed
LOC_Os02g44300OsAffx.12491.1.S1_at10/112+26793804..26796449MSP domain containing protein, expressed
LOC_Os02g44300OsAffx.12491.1.S1_x_at10/112+26793804..26796449MSP domain containing protein, expressed
LOC_Os02g44310Os.9318.1.S1_at11/112+26799119..26799953Cortical cell delineating protein precursor, putative, expressed
LOC_Os02g44320Os.12829.1.S1_at11/112+26808768..26809673Cortical cell delineating protein precursor, putative, expressed
LOC_Os02g44330Os.49719.1.S1_at11/112+26814539..26817515YbaK/prolyl-tRNA synthetases associated domain containing protein, expressed
LOC_Os02g44340Os.50545.1.S1_at11/112+26817767..26820004expressed protein
LOC_Os02g44350OsAffx.27771.1.S1_x_at11/112+26822577..26824805AT hook motif-containing protein, putative
LOC_Os02g44350OsAffx.27771.2.S1_s_at11/112+26822577..26824805AT hook motif-containing protein, putative
LOC_Os02g44360Os.2406.2.S1_a_at11/112+26835716..26838437GRAS family transcription factor containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50545.1.S1_at--1043--6611Chr02:26818311..26818335 (25 bp)
GTTGGATCTATTTCCTGCACTGGTC
LOC_Os02g44340
Os.50545.1.S1_at--276--8591Chr02:26818291..26818315 (25 bp)
TGGTCTCCTCACAAAGGACCTGTTT
LOC_Os02g44340
Os.50545.1.S1_at--805--10071Chr02:26818267..26818291 (25 bp)
TAGGGAAGTTCAGCCGCAACATCTC
LOC_Os02g44340
Os.50545.1.S1_at--947--10031Chr02:26818152..26818176 (25 bp)
TAGTAACCCTAGCTTTTCCAGATTG
LOC_Os02g44340
Os.50545.1.S1_at--22--6611Chr02:26818132..26818156 (25 bp)
GATTGTCACCAATTGCTTCTCAGAA
LOC_Os02g44340
Os.50545.1.S1_at--168--1251Chr02:26818087..26818111 (25 bp)
AGTTGATCTTACATATGTCCCTCCA
LOC_Os02g44340
Os.50545.1.S1_at--345--9451Chr02:26818034..26818058 (25 bp)
TCGGCACCGCACAGTATGATCTTAA
LOC_Os02g44340
Os.50545.1.S1_at--316--1751Chr02:26818010..26818034 (25 bp)
ACCTTTCTTGGTTCAGACGACAGAG
LOC_Os02g44340
Os.50545.1.S1_at--719--1271Chr02:26817942..26817966 (25 bp)
AGATCAAGTTCCCTAGGCTCGTCAT
LOC_Os02g44340
Os.50545.1.S1_at--75--2491Chr02:26817908..26817932 (25 bp)
AATAAACCTAGCTCCAGAAGACCGA
LOC_Os02g44340
Os.50545.1.S1_at--680--2991Chr02:26817858..26817882 (25 bp)
AATGTTGTGCACCTGGAGCGCAGTC
LOC_Os02g44340
Target Sequence 
GTTGGATCTATTTCCTGCACTGGTCTCCTCACAAAGGACCTGTTTAGGGAAGTTCAGCCGCAACATCTCCTAGAATCTTC
AGGTCCTCCAAACATGCAGTCTATATTCTTACCTAGATTATGAGAATTTGTAAATATAGAATCGAGATGAACTAGAAGCT
AGTAACCCTAGCTTTTCCAGATTGTCACCAATTGCTTCTCAGAATCCCACAAACAGAATCAAAAAGTTGATCTTACATAT
GTCCCTCCATGCGAAACAAACGCGCTCAGCAGGCCGGTCGGCACCGCACAGTATGATCTTAACCTTTCTTGGTTCAGACG
ACAGAGCTGCTGATATTTTGTGGTTAATGATAGAGTACTAGAGTCTCTGAGATCAAGTTCCCTAGGCTCGTCATTGGCTA
ATAAATAAACCTAGCTCCAGAAGACCGAGACTATTTGGAGTAAATGTTTCGTGAATGTTGTGCACCTGGAGCGCAGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50545.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis