Browse Element(s) Details


Os.50558.1.A1_at

Description gb:AK121840.1
DB_XREF= gi:37991463
TID=Os.50558.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50558 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033101B22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033101B22, full insert sequence.
FL= gb:AK121840.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g215705/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21550Os.57408.1.S1_at11/112+12788664..12790742oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os02g21560NANA2+12798340..12804725retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g21570Os.50558.1.A1_at5/112+12812002..12812640expressed protein
LOC_Os02g21580NANA2+12815510..12817126expressed protein
LOC_Os02g21590OsAffx.32056.1.S1_x_at6/112+12820861..12827682transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g21590OsAffx.32056.1.S1_at3/112+12820861..12827682transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g21600OsAffx.10637.2.S1_at4/112+12829400..12833067transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g21600OsAffx.10637.3.S1_s_at3/112+12829400..12833067transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g21600OsAffx.10637.4.S1_s_at3/112+12829400..12833067transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g21600OsAffx.10637.1.S1_s_at3/112+12829400..12833067transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g21610NANA2+12834633..12835142hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50558.1.A1_at--269--731Chr02:12812068..12812092 (25 bp)
ATGTTCGCTCCCTCAGAAGCACCGT
LOC_Os02g21570
Os.50558.1.A1_at--1049--5371Chr02:12812053..12812077 (25 bp)
GAAGCACCGTTTTAATGTAGTCCAC
LOC_Os02g21570
Os.50558.1.A1_at--740--10331Chr02:12812043..12812067 (25 bp)
TTTAATGTAGTCCACACCCAGCCTA
LOC_Os02g21570
Os.50558.1.A1_at--971--1811Chr02:12812028..12812052 (25 bp)
ACCCAGCCTACATGGACAGGAGCAA
LOC_Os02g21570
Os.50558.1.A1_at--115--2571Chr02:12812005..12812029 (25 bp)
AACTGATGTGGTATTCTTTGCCCTC
LOC_Os02g21570
Os.50558.1.A1_at--75--10231Chr02:12811994..12812018 (25 bp)
TATTCTTTGCCCTCTAGTGATGCAG
NONE
Os.50558.1.A1_at--440--9171Chr02:12811987..12812011 (25 bp)
TGCCCTCTAGTGATGCAGGATCAAG
NONE
Os.50558.1.A1_at--548--4951Chr02:12811944..12811968 (25 bp)
GCATATAAGCACAACCTGTAACAGT
NONE
Os.50558.1.A1_at--165--2631NONE
AACCTGTAACAGTGTTCTGCTGCTA
NONE
Os.50558.1.A1_at--975--2831Chr02:12809608..12809632 (25 bp)
AAGTAGTTCCTATTTGACGAGAGAC
NONE
Os.50558.1.A1_at--765--1351Chr02:12809589..12809613 (25 bp)
AGAGACATTCTCTGGCTGCCAATAA
NONE
Target Sequence 
ATGTTCGCTCCCTCAGAAGCACCGTTTTAATGTAGTCCACACCCAGCCTACATGGACAGGAGCAACTGATGTGGTATTCT
TTGCCCTCTAGTGATGCAGGATCAAGGTGAATTTAAGCGAAGGTGCATATAAGCACAACCTGTAACAGTGTTCTGCTGCT
ATTTCATGGTTATGTAACCACGCAATAGTTCTTTAGTTATGTAACCAAGAAATTGTGAAACACATGAATGAGCTTTCAAT
AGCTCAATTCTGAGGGTGTCAGTGGTGCTGCAAACAGTAACAAATGAAGGCATACTTTGGAGCTTAGCCGGAGCTTCACA
GAGCTAGGTCTATGGCCCTTGCGGCTCAAGTGGTCTTGTTTTTCTGTTTTTAAGTGTTTAGGGTGGGGAGTTTCTGGATT
CTCCTCCTATGTGTATCTTCTTCTTAGTAATGAAATGATGTGCATATCTTTAGTTTGTTCGGAAAGAAAAAATAGTTCTT
TGCCCCAAAAGCAAAAAAAAAAAGTAGTTCCTATTTGACGAGAGACATTCTCTGGCTGCCAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50558.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis